FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEB8 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS185) GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 94/169 (55.62%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +V +    V++STQH + V+  ++   + + +IKPV+P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKIVGI--DAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKFFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEB5 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 94/169 (55.62%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +V +    V++STQH + V+  ++   + + +IKPV+P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKIVGI--DAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKFFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEB2 (S-adenosylmethionine synthetase OS=Shewanella baltica (strain OS223) GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 94/169 (55.62%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  + +EVRKNGT PWLRPD K+QVT  Y  ++G +V +    V++STQH + V+  ++   + + +IKPV+P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAY--DDGKIVGI--DAVVLSTQHRDDVSQADLIEGVMETIIKPVLPAQWLNKDTKFFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_RALSO (S-adenosylmethionine synthetase OS=Ralstonia solanacearum GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 92/169 (54.44%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP     A +L  + +++R++G  PWLRPD K+QVTV Y N      P  V TV++STQH   ++ ++I   + + +IKPV+P   L + T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK++VA+GLAR+C
Sbjct:  134 TPELMPFPIYYAHRLVERQSQLRRDGRLPWLRPDAKSQVTVRYVNGK----PHSVDTVVLSTQHAPEISQEQIREAVIEEIIKPVLPSHMLAE-TKYLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQC 297          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_MICAN (S-adenosylmethionine synthetase OS=Microcystis aeruginosa (strain NIES-843) GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 99/179 (55.31%), Postives = 124/179 (69.27%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV--------TNDEIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPE MPL   LA ++  +L  VRK G   +LRPDGKTQV+V Y  E+G   PV + T+L+STQHD T+           +I +DL + V++PV  D  +  D  T + +NP+G+FVIGGP GDAGLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  142 TPEFMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVSVIY--EDGR--PVGIDTILVSTQHDATIGDITDNDLVQQKIKSDLWEAVVQPVFSDLEIKPDANTRYLVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLADKC 316          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_HAEIG (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain PittGG) GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 93/169 (55.03%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP +   A +L  K  EVRK+G   WLRPD K+QVT++Y +       V V  V++STQH E V+  ++   + + +IKPV+P ++L  +T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAAITYAHRLMEKQAEVRKSGKLAWLRPDAKSQVTLKYEDNK----IVGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPSEWLSKETKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 90/169 (53.25%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP LMP     A +L  +  E+RK+G  PWLRPD K+Q+T  Y    G  +P R+ TV++STQH   + +  ++  + + ++KPV+P + +  +T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLAR+C
Sbjct:  133 TPTLMPFPIYYAHRLVQRQAELRKDGRLPWLRPDAKSQITCVYDAATG--LPKRIDTVVLSTQHSPDIDHKTLSEAVIEDIVKPVLPPEMITPETKFLINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLARQC 299          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CHLCH (S-adenosylmethionine synthetase OS=Chlorobium chlorochromatii (strain CaD3) GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 97/177 (54.80%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTC-PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD-------ETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP +   A +L  KL E+RK G    +LRPD K+QVT+EY N+    +  RV  ++ISTQHD       E    + I  D+ ++VIK +IP   +D+ T  H+NP+GRF IGGPHGD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  138 TPELMPAAIQFAQQLVKKLAEIRKEGKMMTYLRPDAKSQVTLEYEND----IAKRVDAIVISTQHDPEPAGISEAEWQEIIKKDVIENVIKVLIPANMIDENTKLHINPTGRFEIGGPHGDTGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAARHVAKNIVAAGLAEKC 310          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_AMOPS (S-adenosylmethionine synthetase OS=Amoeba proteus symbiotic bacterium GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 86/169 (50.89%), Postives = 121/169 (71.60%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     + +L A+  E+RKN   PWLRPDGK Q+T++Y  + G   PV + T++ STQH   +++ ++   +++ +IKPV+P+++L   T +++NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGG FSGKDP+KVDRSGAY  R  AK++VA+G+A +C
Sbjct:  131 TDVCMPAPIAYSHRLMARQAELRKNNKLPWLRPDGKCQLTLKY--DQGK--PVAIDTIVFSTQHAPEISHKDLVEAVREEIIKPVLPEEWLSAATRYYINPTGRFVIGGPLGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSGAYAARHVAKNLVAAGIAEKC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ACIF5 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.200e-46
Identity = 90/169 (53.25%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +   VRK+G  PWLRPD K+QVTV Y ++     PV + TV++STQH   +++ ++   +++ +IKPV+P + +   T + +NP+GRFVIGGP GD GLTGRKII+DTYGG  +HGGGAFSGKDP+KVDRS +Y  R  AK+IVA+GLARRC
Sbjct:  134 TDVLMPTPIYFAHRLTERQAMVRKDGRLPWLRPDAKSQVTVRYEDDR----PVAIDTVVLSTQHAPDISHADLVEAVREEIIKPVLPPEMIHKDTKYLINPTGRFVIGGPVGDCGLTGRKIIVDTYGGQGSHGGGAFSGKDPSKVDRSSSYAGRYVAKNIVAAGLARRC 298          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHEB83.200e-4655.62S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB53.200e-4655.62S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_SHEB23.200e-4655.62S-adenosylmethionine synthetase OS=Shewanella balt... [more]
METK_RALSO3.200e-4654.44S-adenosylmethionine synthetase OS=Ralstonia solan... [more]
METK_MICAN3.200e-4655.31S-adenosylmethionine synthetase OS=Microcystis aer... [more]
METK_HAEIG3.200e-4655.03S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_CHRVO3.200e-4653.25S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_CHLCH3.200e-4654.80S-adenosylmethionine synthetase OS=Chlorobium chlo... [more]
METK_AMOPS3.200e-4650.89S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_ACIF53.200e-4653.25S-adenosylmethionine synthetase OS=Acidithiobacill... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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