FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_STRAW (S-adenosylmethionine synthetase OS=Streptomyces avermitilis GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 99/177 (55.93%), Postives = 124/177 (70.06%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAA-DLKQHVIKPVIPDKYLDDKTIFH-------LNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP LMPL   LA +L  +L+EVRKNGT P+LRPDGKTQVT+EY  +      VR+ TV++S+QH   +  D + A D+++ V++P +    LDD            +NP+GRF IGGP GDAGLTGRKIIIDTYGG   HGGGAFSGKDP+KVDRS AY +R  AK++VA+GLA RC
Sbjct:  141 TPTLMPLPIHLAHRLSHRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVVSSQHASDIDLDSLLAPDIREFVVEPELK-ALLDDGIKLETEGYRLLVNPTGRFEIGGPMGDAGLTGRKIIIDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLASRC 312          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEPW (S-adenosylmethionine synthetase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 92/169 (54.44%), Postives = 116/169 (68.64%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     + KL  + +EVRK+ T PWLRPD K+QVT  Y N+        +  V++STQH E V+  ++   + + +IKPV+P K+L   T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYSHKLVKRQSEVRKDKTLPWLRPDAKSQVTFAYNNDGSI---AGIDAVVLSTQHREDVSQADLIEGVMETIIKPVLPAKWLSKDTKYFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_HAEIN (S-adenosylmethionine synthetase OS=Haemophilus influenzae GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 92/169 (54.44%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP +   A +L  K +EVRK+G   WLRPD K+QVT++Y +       V V  V++STQH E V+  ++   + + +IKPV+P ++L  +T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGK+P+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAAITYAHRLMEKQSEVRKSGKLAWLRPDAKSQVTLKYEDNK----IVGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPSEWLSKETKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKEPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CHLTE (S-adenosylmethionine synthetase OS=Chlorobium tepidum GN=metK PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 98/177 (55.37%), Postives = 120/177 (67.80%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTC-PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD-------ETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP +   A +L   L E+RK G    +LRPD K+QVT+EY   +  +   RV  V++STQHD       E      I  D+ ++VIK VIP K +D+ T FH+NP+GRF IGGPHGD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  138 TPELMPAAIQYAQELVRLLAEIRKEGKIMTYLRPDAKSQVTLEYDGNDNVL---RVEAVVVSTQHDPEPAGMSEAEFQAVIKNDVIENVIKKVIPAKLIDENTKFHINPTGRFEIGGPHGDTGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAARHVAKNIVAAGLADKC 311          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_BORPD (S-adenosylmethionine synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 91/169 (53.85%), Postives = 117/169 (69.23%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP+LMP     A +L  + +E+RK+G  PWLRPD K+QVT  Y +      PV V TV++STQH   ++   I   + + +IKP  P+  +  +T F +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK++VA+GLAR+C
Sbjct:  135 TPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PVEVDTVVLSTQHAPEISQSAIHEAVIEDIIKPSFPEGLITPRTKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQC 299          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ACIAD (S-adenosylmethionine synthetase OS=Acinetobacter sp. (strain ADP1) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 92/169 (54.44%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  E+R++G  PWLRPD K+QVT  Y  ENG  +PVR+  V++STQHD  ++  ++   + + ++KPVIP +     T FH+NP+G FVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  132 TDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAY--ENG--MPVRLDAVVLSTQHDPEISQAQLKEAVIEEIVKPVIPSEMFHAGTKFHINPTGMFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK1_PINCO (S-adenosylmethionine synthetase 1 OS=Pinus contorta GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.129e-46
Identity = 89/166 (53.61%), Postives = 123/166 (74.10%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 500
            T   +PL+  L+ +L  ++ +VR+ GT  +LRPD K +V+VE  + N      R+  V++STQHDETVT D++  D+++ VI PV+P + +DD+TI+++NPSGRFV+GGP  D+GLTGRKII+DTYGG   HGGGAFSGKD TKVDRS AY  R  AK++VA+G+A
Sbjct:  135 TDNYLPLTLALSHRLMRQIRDVREAGTLNYLRPDAKAEVSVELDDNNQVS---RIAAVVLSTQHDETVTLDQLREDVRRLVIDPVLPQELVDDETIYYINPSGRFVLGGPQADSGLTGRKIIVDTYGGAAHHGGGAFSGKDATKVDRSAAYFARYVAKNLVAAGVA 297          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHESW (S-adenosylmethionine synthetase OS=Shewanella sp. (strain W3-18-1) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.311e-46
Identity = 91/169 (53.85%), Postives = 114/169 (67.46%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  + +EVRKNGT PWLRPD K+QVT  Y N       V +  +++STQH   +   ++   + + +IKPV+P ++L   T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TEILMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAYENNK----IVGIDAIVLSTQHSPDIAQADLIEGVMESIIKPVLPAQWLSKDTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_RALEH (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.311e-46
Identity = 93/169 (55.03%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP     A +L  + + +R++G  PWLRPD K+QVTV Y +      P  V TV++STQH   +T  +I   + + +IKPV+P + L + T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK++VASGLAR+C
Sbjct:  134 TPELMPFPIYYAHRLVERQSLLRRDGRLPWLRPDAKSQVTVRYVDGK----PHSVDTVVLSTQHSPDITQAQIREAVIEEIIKPVLPAEMLKE-TKYLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGASPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVASGLARQC 297          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ALCBS (S-adenosylmethionine synthetase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.311e-46
Identity = 90/169 (53.25%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     + +L  +  ++RKN T PWLRPD K+QVT+ Y  +NG   PV V  V++STQH   +   ++   + + +IKPV+P+++L   T++H+NP+G FVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  132 TDTLMPAPVYYSHRLVERQAKLRKNSTLPWLRPDAKSQVTLRY--DNGK--PVAVDAVVLSTQHSPDIKLADLREAVMEEIIKPVLPEEWLHKDTLYHVNPTGIFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASKC 296          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STRAW7.129e-4655.93S-adenosylmethionine synthetase OS=Streptomyces av... [more]
METK_SHEPW7.129e-4654.44S-adenosylmethionine synthetase OS=Shewanella piez... [more]
METK_HAEIN7.129e-4654.44S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_CHLTE7.129e-4655.37S-adenosylmethionine synthetase OS=Chlorobium tepi... [more]
METK_BORPD7.129e-4653.85S-adenosylmethionine synthetase OS=Bordetella petr... [more]
METK_ACIAD7.129e-4654.44S-adenosylmethionine synthetase OS=Acinetobacter s... [more]
METK1_PINCO7.129e-4653.61S-adenosylmethionine synthetase 1 OS=Pinus contort... [more]
METK_SHESW9.311e-4653.85S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_RALEH9.311e-4655.03S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_ALCBS9.311e-4653.25S-adenosylmethionine synthetase OS=Alcanivorax bor... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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