FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEWM (S-adenosylmethionine synthetase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 92/169 (54.44%), Postives = 118/169 (69.82%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T   MP     +  L  + +EVRK+ T PWLRPD K+QVT  Y N +G++  +    V++STQH E VT  ++   + + +IKPV+P K+L  +T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVFMPAPITYSHMLVKRQSEVRKDKTLPWLRPDAKSQVTFAY-NSDGSIAGI--DAVVLSTQHSEDVTQADLIEGVMESIIKPVLPAKWLSKETKYFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 296          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SHEPC (S-adenosylmethionine synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 91/169 (53.85%), Postives = 114/169 (67.46%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A  L  + +EVRKNGT PWLRPD K+QVT  Y N       V +  +++STQH   +   ++   + + +IKPV+P ++L   T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TEILMPAPITYAHALVKRQSEVRKNGTLPWLRPDAKSQVTFAYENNK----IVGIDAIVLSTQHSPDIAQADLIEGVMETIIKPVLPAQWLSKDTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_RHOE4 (S-adenosylmethionine synthetase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 98/173 (56.65%), Postives = 121/173 (69.94%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAA-DLKQHVIKPVIPDKYLDDKTIFHL----NPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA +L  +LTEVRK+G  P+LRPDGKTQVT+EY  +      VR+ TV+ISTQH   +  D +   DL++ V+  V+ D  L D     +    NP+G+FV+GGP GDAGLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY +R  AK+ VA+GLA R
Sbjct:  145 TPELMPLPIALAHRLSRRLTEVRKSGVLPYLRPDGKTQVTIEYDGDKA----VRLDTVVISTQHAADIDLDNLLTPDLREKVLHSVLTDVNLTDLDTSDVRLLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNAVAAGLADR 313          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PASMU (S-adenosylmethionine synthetase OS=Pasteurella multocida GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 90/169 (53.25%), Postives = 120/169 (71.01%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP +   A +L  +  +VRK GT PWLRPD K+QVT++Y +       V V  V++STQH ++++  ++   + + +IKPV+P ++L  +T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TEVLMPAAITYAHRLMERQAKVRKEGTLPWLRPDAKSQVTLKYEDHK----IVGVDAVVLSTQHCDSISQHDLHEAVMEEIIKPVLPAEWLSKETKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_NOSP7 (S-adenosylmethionine synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 100/178 (56.18%), Postives = 123/178 (69.10%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPELMPL   LA ++  +L  VRK G   +LRPDGKTQVTV Y  E+G   PV + T+LISTQH        DE     +I  DL   V++PV  D  +  +D+T F +NP+G+FV+GGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +
Sbjct:  142 TPELMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVTVVY--EDGR--PVGIDTILISTQHTATIGEITDEAAVQAKIKQDLWSAVVEPVFGDIDVKPNDQTRFLVNPTGKFVVGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAEK 315          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CORU7 (S-adenosylmethionine synthetase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 100/173 (57.80%), Postives = 120/173 (69.36%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYL-----DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 506
            TPE MPL   +A +L  +LTEVRK      LRPDGKTQVT EY   + A  PVR+ TV+ISTQHD   T DE+   L +HV+  V+ D+ L     +D  +  +NPSG F++GGP GDAGLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA R
Sbjct:  141 TPEYMPLPISVAHRLSRRLTEVRKEEIVTGLRPDGKTQVTFEY---DDAGTPVRLDTVVISTQHDPERTQDELRELLSEHVVGHVLADESLKPFVTEDLNLL-VNPSGSFILGGPAGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLADR 309          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CHLP8 (S-adenosylmethionine synthetase OS=Chlorobaculum parvum (strain NCIB 8327) GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 98/177 (55.37%), Postives = 124/177 (70.06%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTC-PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD-------ETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP +   A +L   L E+RK G    +LRPD K+QVT+EY +EN  ++  RV  V++STQHD       E    + I  D+ ++VI+ VIP + +D+ T FH+NP+GRF IGGPHGD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  138 TPELMPAAIQYAQELVRLLAEIRKEGKIMTYLRPDSKSQVTLEY-DENDKVL--RVDAVVVSTQHDPEPAGMSEAEFQEVIKNDIIENVIRKVIPAELIDENTKFHINPTGRFEIGGPHGDTGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAARHVAKNIVAAGLADKC 311          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_AZOSE (S-adenosylmethionine synthetase OS=Azoarcus sp. (strain EbN1) GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 90/169 (53.25%), Postives = 119/169 (70.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TP L+PL    A ++  + +E+RK+G   WLRPD K+Q+TV Y +      PV + TV++STQH   V++ +I   + + +IKPV+P   +  +  + +NP+GRFVIGGPHGD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  134 TPSLIPLPIYYAHRIMQRQSELRKDGRLNWLRPDAKSQLTVRYVDGK----PVAIDTVVVSTQHSPEVSHAQITELVIEEIIKPVLPSALMQGEVRYLINPTGRFVIGGPHGDCGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYAGRWVAKNIVAAGLADRC 298          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ALHEH (S-adenosylmethionine synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.216e-45
Identity = 91/169 (53.85%), Postives = 117/169 (69.23%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            T  LMP     A +L  +  EVR NG  PWLRPD K+QVT+ Y +      PV V TV++STQH   +T  ++   + + +IKPV+P++++  +T + +NP+GRFVIGGP GD GLTGRKII+DTYGG   HGGG FSGKDP+KVDRS AY  R  AK+IVA+GLA RC
Sbjct:  131 TDVLMPAPITYAHRLVQRQAEVRCNGQLPWLRPDAKSQVTLRYVDGR----PVAVDTVVLSTQHAPDLTQAQVHEAVIEEIIKPVLPEQWITGETRYLVNPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGCFSGKDPSKVDRSAAYACRYVAKNIVAAGLAERC 295          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_PELLD (S-adenosylmethionine synthetase OS=Pelodictyon luteolum (strain DSM 273) GN=metK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.588e-45
Identity = 99/177 (55.93%), Postives = 120/177 (67.80%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTC-PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD-------ETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP +   A +L   L ++RK G    +LRPD K+QVT+EY +E  A    RV  V++STQHD       E    + I  D+ ++VIK VIP   LD  T FH+NP+GRF IGGPHGD GLTGRKII+DTYGG   HGGGAFSGKDP+KVDRS AY  R  AK+IVA+GLA +C
Sbjct:  138 TPELMPAAIQFAQQLVKVLADIRKAGKIMTYLRPDAKSQVTLEYVDEKVA----RVDAVVVSTQHDPEPAGMSEAEFQEVIKKDIIENVIKKVIPANLLDLNTKFHINPTGRFEIGGPHGDTGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYASRHVAKNIVAAGLAEKC 310          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHEWM1.216e-4554.44S-adenosylmethionine synthetase OS=Shewanella wood... [more]
METK_SHEPC1.216e-4553.85S-adenosylmethionine synthetase OS=Shewanella putr... [more]
METK_RHOE41.216e-4556.65S-adenosylmethionine synthetase OS=Rhodococcus ery... [more]
METK_PASMU1.216e-4553.25S-adenosylmethionine synthetase OS=Pasteurella mul... [more]
METK_NOSP71.216e-4556.18S-adenosylmethionine synthetase OS=Nostoc punctifo... [more]
METK_CORU71.216e-4557.80S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_CHLP81.216e-4555.37S-adenosylmethionine synthetase OS=Chlorobaculum p... [more]
METK_AZOSE1.216e-4553.25S-adenosylmethionine synthetase OS=Azoarcus sp. (s... [more]
METK_ALHEH1.216e-4553.85S-adenosylmethionine synthetase OS=Alkalilimnicola... [more]
METK_PELLD1.588e-4555.93S-adenosylmethionine synthetase OS=Pelodictyon lut... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
back to top