FC930974

Overview
NameFC930974
Unique NameFC930974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.522e-61
Identity = 107/170 (62.94%), Postives = 135/170 (79.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            T E MPL+ VLA KL  ++ ++R++G  PWLRPD KTQVTV+Y  +NGA++PVR+HT++IS QH+E +T + +   LK+ VIK V+P KYLD+ T++HL PSGRFVIGGP GDAG+TGRKII+DTYGGW AHGGGAFSGKD TKVDRS AY  R  AKS+V +GL RR +
Sbjct:  147 TEECMPLTIVLAHKLNTRIADLRRSGVLPWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEAMQEALKEQVIKAVVPAKYLDEDTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVL 316          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.025e-60
Identity = 110/170 (64.71%), Postives = 133/170 (78.24%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            T E MPL+ +L+ KL  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ D++  +L + VIK VIP   +DDKTI+HLNP G F+IGGP GDAGLTGRKII+DTYGGW AHGGGAFSGKDPTKVDRS AY  R  AKS+V SGL RRC+
Sbjct:  134 TEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNPCGSFIIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKSGLCRRCL 303          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.283e-60
Identity = 109/170 (64.12%), Postives = 133/170 (78.24%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            T E MPL+ +L+ KL  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ D++  +L + VIK VIP   +DDKTI+HLNP G F+IGGP GDAGLTGRKII+DTYGGW AHGGGAFSGKDPTKVDRS AY  R  AKS+V +GL RRC+
Sbjct:  134 TEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYHLNPCGSFIIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCL 303          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 2.981e-60
Identity = 106/170 (62.35%), Postives = 137/170 (80.59%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            T E MPL+ +LA +L A++ E+R++G  PWL+PD KTQVTV+Y  +NGA++P+RVHTV+IS QH+E +T +++   LK+ VI+ V+P +YLD+ TI+HL PSGRFVIGGP GDAG+TGRKII+DTYGGW AHGGGAFSGKD TKVDRS AY  R  AKS+V +GL RR +
Sbjct:  147 TEECMPLTIMLAHRLNARMAELRRSGQLPWLQPDSKTQVTVQYTQDNGAVIPMRVHTVVISVQHNEDITLEDMRRALKEQVIRAVVPARYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVL 316          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 6.642e-60
Identity = 101/170 (59.41%), Postives = 138/170 (81.18%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            TPE +PL+ +LA KL A ++  R++G+ PWLRPD KTQVT+EY  ENGA++P RV T+++S QH ++++ +++ +++ + +IKP +P   LD+KT++H+ PSGRFV+GGP GDAGLTGRKII+DTYGGW AHGGGAFSGKD +KVDRS AY  R  AKS+VA+GLARRC+
Sbjct:  133 TPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLLDEKTVYHIQPSGRFVVGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKVDRSAAYAARWIAKSLVAAGLARRCL 302          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.480e-59
Identity = 105/170 (61.76%), Postives = 136/170 (80.00%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            TPEL PL+ + A KL A ++  R++G+ PWLRPD KTQVT+EY ++NGA+VP+RV TV++S QH   +T +E+  ++ + +IK  IP KYLD+KT++H+ PSG FVIGGP GDAGLTGRKII+DTYGGW AHGGGAFSGKD +KVDRS AY+ R  AKS+VA+GLARR +
Sbjct:  145 TPELFPLTLLFAHKLNAAMSAARRDGSLPWLRPDTKTQVTIEYKHDNGAVVPLRVDTVVVSAQHAPEITTEELRKEILEKIIKTTIPAKYLDEKTVYHIQPSGLFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFSKVDRSAAYVGRWIAKSLVAAGLARRAL 314          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.480e-59
Identity = 102/170 (60.00%), Postives = 135/170 (79.41%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            TPEL+PL+ +LA +L A + + R++G+ PWLRPD KTQVT+EY ++ GA+VP +V TV++S QH E +T +E+  ++ + +IK  IP KYLD+ T+FH+ PSG F+IGGP GDAGLTGRKII+DTYGGW AHGGGAFSGKD +KVDRS AY+ R  AKS+V +GL RRC+
Sbjct:  142 TPELLPLTLLLAHQLNANMAKARRDGSLPWLRPDTKTQVTIEYEHDGGAVVPKKVKTVVVSAQHSEDITTEELRKEILEKIIKTTIPAKYLDEDTVFHIQPSGLFIIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKVDRSAAYLARWIAKSLVTAGLVRRCL 311          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK5_CAEEL (Probable S-adenosylmethionine synthetase 5 OS=Caenorhabditis elegans GN=sams-5 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 2.137e-58
Identity = 105/170 (61.76%), Postives = 132/170 (77.65%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 512
            T E MPL+ +L+ KL  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ +++  +L + VIK VIP   +D+ T++HLNP G FV+GGP GDAGLTGRKII+DTYGGW AHGGGAFSGKDPTKVDRS AY  R  AKS+V +GL RRC+
Sbjct:  134 TEEAMPLTLLLSHKLNYKLHELRRSGELEWVRPDSKTQVTIEYSSEGGACVPLRVHTVVISTQHSPDISLEDLRKELIEKVIKVVIPGNLIDNDTVYHLNPCGSFVVGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAGLCRRCL 303          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CLOD6 (S-adenosylmethionine synthetase OS=Clostridium difficile (strain 630) GN=metK PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 4.760e-58
Identity = 115/169 (68.05%), Postives = 129/169 (76.33%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMPL   LA KL  +LTEVRK G   +LRPDGKTQVTVEY         VRVHTVLIS QH ETV+ND+I  DL  HVIK VIP + LD++T  ++NP+GRFVIGGP GD GLTGRKIIIDTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLA +C
Sbjct:  142 TPELMPLPISLAHKLSRRLTEVRKTGLVDYLRPDGKTQVTVEYEGSKA----VRVHTVLISAQHCETVSNDKIREDLINHVIKEVIPAELLDEETKIYINPTGRFVIGGPQGDTGLTGRKIIIDTYGGYSRHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKC 306          
BLAST of FC930974 vs. ExPASy Swiss-Prot
Match: METK_CLOTH (S-adenosylmethionine synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=metK PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.085e-57
Identity = 112/169 (66.27%), Postives = 131/169 (77.51%), Query Frame = 3
Query:    3 TPELMPLSHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWXAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRC 509
            TPELMP+   LA KL  +L++VRKNGT  +LRPDGK+QVTVEY  +     PVRV TVLISTQH   V  D I  D+ +HVIKPVIP + LD KT + +NP+GRFVIGGP GD+GLTGRKII+DTYGG+  HGGGAFSGKDPTKVDRS AY  R  AK+IVA+GLAR+C
Sbjct:  142 TPELMPMPISLAHKLAMRLSQVRKNGTLNYLRPDGKSQVTVEYDGDK----PVRVDTVLISTQHGPEVDYDTIKRDVIEHVIKPVIPAELLDSKTKYLVNPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARKC 306          
The following BLAST results are available for this feature:
BLAST of FC930974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_MOUSE3.522e-6162.94S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK3_CAEEL1.025e-6064.71Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK4_CAEEL2.283e-6064.12Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK1_BOVIN2.981e-6062.35S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_SCHPO6.642e-6059.41S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK_NEUCR1.480e-5961.76S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK_ASCIM1.480e-5960.00S-adenosylmethionine synthetase OS=Ascobolus immer... [more]
METK5_CAEEL2.137e-5861.76Probable S-adenosylmethionine synthetase 5 OS=Caen... [more]
METK_CLOD64.760e-5868.05S-adenosylmethionine synthetase OS=Clostridium dif... [more]
METK_CLOTH3.085e-5766.27S-adenosylmethionine synthetase OS=Clostridium the... [more]

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Properties
Property NameValue
Genbank descriptionC34100A09EF PostHarvP1 Citrus clementina cDNA clone C34100A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930974 ID=FC930974; Name=FC930974; organism=Citrus clementina; type=EST; length=513bp
GGACTCCTGAGTTGATGCCTTTGAGTCATGTGCTTGCAACAAAGCTTGGT
GCTAAGCTTACAGAAGTGAGGAAGAATGGGACCTGTCCGTGGCTGAGGCC
AGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAATGGCGCCA
TGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCACGATGAG
ACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATGTGATCAA
GCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTCCATCTTA
ACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGCTGGGCTC
ACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGNGGGCACACGG
TGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGAAGCGGTG
CTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGGGCTTGCC
AGGAGATGCATTG
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