FC930997

Overview
NameFC930997
Unique NameFC930997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 60/191 (31.41%), Postives = 89/191 (46.60%), Query Frame = 3
Query:  138 KRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKTEKA 710
            KRL   +   + +    + P P+ G H   + + L+ I+R+ LK +   RE   IL    V VD K   +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D   K  D   + +   KI+E IK   GN   +T G +  + G I   +A
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEA 194          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 53/193 (27.46%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  123 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 698
            +  H KRL+ P  W +++    F  K  +GPH     +PL+++LR+ L YA   +E    L + +VL++ K  +D+  P G  D+++  +  E +R+     GR  L +I  + A+ KL K+ +      G   +  +DG T I   D    A D+I +  E  ++    +++ G +V    G + G VG ++
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVE 192          
BLAST of FC930997 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 58/202 (28.71%), Postives = 100/202 (49.50%), Query Frame = 3
Query:   96 LTNTKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKLRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKT 701
            +T TK+    +K LK     + W ++ L G+         HK    +PL++ LR+ LK     RE+  IL    V+VD KV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + +   +I + +KF  GN V +TGG + G +  IK+
Sbjct:    2 ITKTKIMMAPRK-LKIARKSRFWAVNSLPGS---------HKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKS 191          
The following BLAST results are available for this feature:
BLAST of FC930997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_THEAC2.136e-1731.4130S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_HALMA1.060e-1627.4630S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4E_PICTO4.028e-1628.7130S ribosomal protein S4e OS=Picrophilus torridus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100C09EF PostHarvP1 Citrus clementina cDNA clone C34100C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930997 ID=FC930997; Name=FC930997; organism=Citrus clementina; type=EST; length=718bp
GGCGGGAGTGGAGCTAGCAGCGCTTGTGAGTGCATTTTTCACTTCGTTTT
TGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCTCAC
GAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATG
CCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAG
CCTTCATCTGGGCCACACAAATTAAGGGAGTGTTTGCCCTTAATTCTTAT
CTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAA
TTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAG
ACTTACCCTGCTGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGA
GAACTTCCGTCTCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAA
TCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAA
TTTGGGCAGAAGGGAATCCCTTACATCAACACTTATGATGGGAGGACTAT
TCGCTACCCAGACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACC
TGGAGACTAACAAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTT
GTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTTGGAATCATTAAGAC
AGAGAAAGCATAAGGGTA
back to top