FC931013

Overview
NameFC931013
Unique NameFC931013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931013 vs. ExPASy Swiss-Prot
Match: PDC1_PEA (Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.824e-41
Identity = 77/105 (73.33%), Postives = 90/105 (85.71%), Query Frame = 2
Query:    5 KACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDF 319
            KA  AF+E A+A GY +AVMPS KGLVPE+HPHFIGTYWGAVST++C EIVESADAY+F GPIFNDYSSVGYSLL+KKEK++I+QP+RV I NG + G V M DF
Sbjct:  254 KAQKAFMEFAEASGYPIAVMPSGKGLVPENHPHFIGTYWGAVSTSYCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKSLIVQPNRVTIGNGLSLGWVFMADF 358          
BLAST of FC931013 vs. ExPASy Swiss-Prot
Match: PDC3_SCHPO (Probable pyruvate decarboxylase C186.09 OS=Schizosaccharomyces pombe GN=SPAC186.09 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.084e-17
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 2
Query:    5 KACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDF 319
            KA +AF+ELA++   +VAVMP+AK   PE HP++ G YWG  ST     I+  +D  + AG  F DYSS G++ L  K   + +  DRV +++   FG VL++DF
Sbjct:  235 KAESAFLELANSLNCSVAVMPNAKSFFPESHPNYAGIYWGQASTLGAESIINWSDCIICAGTTFTDYSSNGWTSLPPKANVLHVDVDRVTVSDA-EFGGVLLRDF 338          
BLAST of FC931013 vs. ExPASy Swiss-Prot
Match: PDC_ZYMMO (Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   17 AFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDF 319
            A V+ ADA G AVA M +AK   PE +PH+IGT WG VS     + ++ ADA +   P+FNDYS+ G++ +   +K V+ +P R V+ NG  F  V +KD+
Sbjct:  228 AAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEP-RSVVVNGIRFPSVHLKDY 327          
BLAST of FC931013 vs. ExPASy Swiss-Prot
Match: PDC_NEUCR (Pyruvate decarboxylase OS=Neurospora crassa GN=cfp PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.020e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   23 VELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYS 223
            +E A+A G AVA+ P+AKG+ PE H  F+G +WG VS+     +V  ADA +  G +FNDYS+VG++
Sbjct:  236 IEFAEAMGCAVALQPAAKGMFPEDHKQFVGIFWGQVSSDAADAMVHWADAMICVGAVFNDYSTVGWT 302          
BLAST of FC931013 vs. ExPASy Swiss-Prot
Match: PDC2_SCHPO (Probable pyruvate decarboxylase C1F8.07c OS=Schizosaccharomyces pombe GN=SPAC1F8.07c PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.135e-11
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   14 NAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIV-ESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIA-NGPAFGCVLMKDF 319
            +AFV+LA+A   A  +MP+AKG   E H ++ G YWG VS++   + V ES+D  + AG +FNDYS+VG+         ++L  D   ++  G  F  V M +F
Sbjct:  233 SAFVKLAEALNCAAFIMPAAKGFYSEEHKNYAGVYWGEVSSSETTKAVYESSDLVIGAGVLFNDYSTVGWR--AAPNPNILLNSDYTSVSIPGYVFSRVYMAEF 334          
The following BLAST results are available for this feature:
BLAST of FC931013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PDC1_PEA6.824e-4173.33Pyruvate decarboxylase isozyme 1 OS=Pisum sativum ... [more]
PDC3_SCHPO3.084e-1742.86Probable pyruvate decarboxylase C186.09 OS=Schizos... [more]
PDC_ZYMMO1.172e-1643.56Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc... [more]
PDC_NEUCR6.020e-1347.76Pyruvate decarboxylase OS=Neurospora crassa GN=cfp... [more]
PDC2_SCHPO1.135e-1138.46Probable pyruvate decarboxylase C1F8.07c OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC34100E02EF PostHarvP1 Citrus clementina cDNA clone C34100E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931013 ID=FC931013; Name=FC931013; organism=Citrus clementina; type=EST; length=321bp
GGACAAGGCTTGCAATGCTTTCGTTGAGCTTGCTGATGCTTGTGGCTACG
CCGTTGCGGTGATGCCATCAGCGAAAGGGCTAGTACCAGAGCACCATCCC
CATTTTATTGGAACTTATTGGGGTGCCGTGAGCACTGCTTTTTGTGCTGA
AATTGTGGAATCTGCTGATGCTTATTTGTTTGCTGGACCTATATTTAATG
ACTATAGCTCGGTTGGGTACTCTCTTCTTCTCAAGAAGGAGAAGGCAGTC
ATTCTGCAGCCTGATCGTGTGGTGATTGCTAATGGACCGGCATTTGGTTG
TGTTTTGATGAAGGATTTCCT
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