FC931115

Overview
NameFC931115
Unique NameFC931115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_BURCJ (Phosphoserine aminotransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=serC PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.503e-37
Identity = 79/162 (48.77%), Postives = 104/162 (64.20%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSGKAEK-YTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSKPVDVTR 504
            +W  SGM VMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL    +  D++VTGSW  K+F EA+KFC P +  SGK E  +T+ P     + + D  Y+H+C NETI GVE  E P   +    LVAD+SS+  S+P+DV +
Sbjct:   27 DWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARNTADFVVTGSWSQKSFGEAKKFCTPHLAASGKTENGFTRAPTRAEWQLSDDPAYVHLCTNETIDGVETFEIPDLGDVP--LVADVSSHILSRPMDVAK 186          
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_DELAS (Phosphoserine aminotransferase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=serC PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.575e-37
Identity = 80/164 (48.78%), Postives = 110/164 (67.07%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKF-CNPQVIWSGKAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAK--NSTGILVADMSSNFCSKPVDVTR 504
            +W  SGM VMEMSHRGKEF SI E+AE+DLR LL +P E+ +LF+QGG   + A VPLNL      VD++++GSW  K+ KEA+K+  +  +  SG+  K+T +P  ++ + +  A Y+HIC+NETIHGVEF+E P  K       LV D SS+  S+PVD +R
Sbjct:   28 DWHGSGMSVMEMSHRGKEFISIYEQAEADLRELLAVPPEFKILFMQGGGLAENAIVPLNLSRAG-TVDFVLSGSWSQKSAKEARKYVADAHIAASGEDGKFTALPAPESWQLSRGASYVHICSNETIHGVEFQELPDLKALGCDAPLVVDFSSHVASRPVDWSR 190          
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_CHRVO (Phosphoserine aminotransferase OS=Chromobacterium violaceum GN=serC PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.575e-37
Identity = 78/161 (48.45%), Postives = 103/161 (63.98%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSKPVDVTR 504
            +W  SGM VMEMSHRGKEF  II  AE DLR L+ IP  Y VLFLQGGA+ QFA  PLNL    D +D + TG W   A KEA+++    V+ S +   +  +P   A +++P+A YLH  +NETI G++F   P+ ++    LV DMSS+F S+ VDV+R
Sbjct:   28 DWHGSGMSVMEMSHRGKEFMEIIHDAEQDLRQLMGIPAGYKVLFLQGGASLQFAMAPLNLLGDKDSIDIVNTGHWSKLAIKEAKRYAKVNVVASSEDRNFCYVPEEAAWQRDPNAAYLHYTSNETIGGLQFPYIPAEQHGVP-LVCDMSSDFLSREVDVSR 187          
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_ACIAC (Phosphoserine aminotransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=serC PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.575e-37
Identity = 82/164 (50.00%), Postives = 110/164 (67.07%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNP-QVIWSGKAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPS--AKNSTGILVADMSSNFCSKPVDVTR 504
            +W  SGMGVMEMSHRGKEF SI E+AE+DLR LL +PQ++ +LF+QGG   + A VPLNL +    VD +VTGSW  K+ KEA+K+ +   V  S +   +T +P+  + + +  A YLH+C+NETIHG+EF E P   A  S   LV D SS+  S+PVD +R
Sbjct:   28 DWHGSGMGVMEMSHRGKEFISIYEQAEADLRELLAVPQDFRILFMQGGGLAENAIVPLNL-SRAATVDMVVTGSWSQKSLKEARKYASEVHVAASAEDSGFTTLPDPASWQLSRGASYLHLCSNETIHGIEFHELPDLRALGSDAPLVIDFSSHVASRPVDWSR 190          
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_RABIT (Phosphoserine aminotransferase OS=Oryctolagus cuniculus GN=PSAT1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.019e-36
Identity = 79/163 (48.47%), Postives = 105/163 (64.42%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNL--CTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSKPVDVTR 504
            +++  G+ V+EMSHR  +F  I+   E+ +R LL +P  Y V+FLQGG   QF+AVPLNL    P    DY+VTG+W  KA +EA+KF    ++   K   YTKIP+      NPDA Y++ CANET+HGVEF   P  K +  ILV DMSSNF S+PVDV++
Sbjct:   31 DYKGLGISVLEMSHRSSDFAKIVNNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKPGRCADYVVTGAWSAKAAEEAKKFGTVNIV-HPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFVPDVKGA--ILVCDMSSNFLSRPVDVSK 190          
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_RALSO (Phosphoserine aminotransferase OS=Ralstonia solanacearum GN=serC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.331e-36
Identity = 77/163 (47.24%), Postives = 111/163 (68.10%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLN----LCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTG-ILVADMSSNFCSKPVD 495
            +W+ SGM VMEMSHRG+EF+SI+ +A +DLR LL +P  Y +LFLQGGA  + A VPLN    L       DY+VTG+W  K+ +EA+K+    +  S +AE++ +IP+  A + + DA Y+H+C NETI GVE++E P    + G ++VAD+SS+  S+PVD
Sbjct:   39 SWQGSGMSVMEMSHRGREFESIMAQAFADLRELLAVPDNYEILFLQGGAIAENAIVPLNLMRRLSLDAPKADYVVTGTWSVKSQQEARKYGEVNIAASSEAERFHRIPDVSAWKLSDDAAYVHLCTNETIVGVEYQETPDIGQAHGRVVVADVSSHILSRPVD 201          
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_BURVG (Phosphoserine aminotransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=serC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.331e-36
Identity = 78/162 (48.15%), Postives = 105/162 (64.81%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSGK-AEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSKPVDVTR 504
            +W  SGM VMEMSHRGKEF SI E A +DLR LL++P  + +LFLQGG   + A VP+NL       D++VTGSW  K+F EA+K+C P +  SGK A+ +T+ P     + + D  Y+H+C NETI GVE  E P   +    LVAD+SS+  S+P+DV +
Sbjct:   27 DWHGSGMSVMEMSHRGKEFMSIHETALADLRELLDVPASHRILFLQGGGIAENAIVPMNLLGWRKSADFVVTGSWSQKSFNEAKKYCTPHLAASGKTADGFTRAPTRAEWQLSDDPAYVHLCTNETIDGVETFEIPDLGDVP--LVADVSSHILSRPMDVAK 186          
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_BURCC (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=serC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.331e-36
Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSGKAEK-YTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSKPVDVTR 504
            +W  SGM VMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSW  K+F EA+KFC P +  SGK E  +T+ P     + + D  Y+H+C NETI GVE  E P   +    LVAD+SS+  S+P+DV +
Sbjct:   27 DWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARKTADFVVTGSWSQKSFGEAKKFCTPHLAASGKTEAGFTRAPARAEWQLSDDPAYVHLCTNETIDGVETFEIPDLGDVP--LVADVSSHILSRPMDVAK 186          
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_BURCH (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain HI2424) GN=serC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.270e-36
Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSGKAEK-YTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSKPVDVTR 504
            +W  SGM VMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSW  K+F EA+KFC P +  SGK E  +T+ P     + + D  Y+H+C NETI GVE  E P   +    LVAD+SS+  S+P+DV +
Sbjct:   27 DWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARKTADFVVTGSWSQKSFGEAKKFCAPHLAASGKTEAGFTRAPARAEWQLSDDPAYVHLCTNETIDGVETFEIPDLGDVP--LVADVSSHILSRPMDVAK 186          
BLAST of FC931115 vs. ExPASy Swiss-Prot
Match: SERC_BURCA (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=serC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.270e-36
Identity = 79/162 (48.77%), Postives = 103/162 (63.58%), Query Frame = 1
Query:   22 NWRASGMGVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSGKAEK-YTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSKPVDVTR 504
            +W  SGM VMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSW  K+F EA+KFC P +  SGK E  +T+ P     + + D  Y+H+C NETI GVE  E P   +    LVAD+SS+  S+P+DV +
Sbjct:   27 DWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARKTADFVVTGSWSQKSFGEAKKFCAPHLAASGKTEAGFTRAPARAEWQLSDDPAYVHLCTNETIDGVETFEIPDLGDVP--LVADVSSHILSRPMDVAK 186          
The following BLAST results are available for this feature:
BLAST of FC931115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_BURCJ3.503e-3748.77Phosphoserine aminotransferase OS=Burkholderia cep... [more]
SERC_DELAS4.575e-3748.78Phosphoserine aminotransferase OS=Delftia acidovor... [more]
SERC_CHRVO4.575e-3748.45Phosphoserine aminotransferase OS=Chromobacterium ... [more]
SERC_ACIAC4.575e-3750.00Phosphoserine aminotransferase OS=Acidovorax avena... [more]
SERC_RABIT1.019e-3648.47Phosphoserine aminotransferase OS=Oryctolagus cuni... [more]
SERC_RALSO1.331e-3647.24Phosphoserine aminotransferase OS=Ralstonia solana... [more]
SERC_BURVG1.331e-3648.15Phosphoserine aminotransferase OS=Burkholderia vie... [more]
SERC_BURCC1.331e-3648.77Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_BURCH2.270e-3648.77Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_BURCA2.270e-3648.77Phosphoserine aminotransferase OS=Burkholderia cen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101F03EF PostHarvP1 Citrus clementina cDNA clone C34101F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931115 ID=FC931115; Name=FC931115; organism=Citrus clementina; type=EST; length=505bp
ATCTGGCCGGGAGGAGCTTTCAACTGGCGCGCATCTGGCATGGGCGTGAT
GGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTG
AATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTG
TTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTT
GTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGTGGGGTG
ACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGG
TCTGGAAAAGCTGAAAAGTACACAAAGATTCCAAATTTTGATGCTTTGGA
GCAAAACCCAGATGCCAAGTATTTGCATATTTGTGCTAATGAGACAATTC
ATGGTGTTGAGTTTAAGGAGTATCCGTCGGCTAAGAATTCAACTGGTATT
CTAGTCGCTGATATGTCTTCCAATTTTTGTTCAAAGCCTGTTGATGTTAC
CAGGT
back to top