FC931138

Overview
NameFC931138
Unique NameFC931138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CLOBH (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CLOB1 (V-type ATP synthase beta chain OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METMP (V-type ATP synthase beta chain OS=Methanococcus maripaludis GN=atpB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.154e-47
Identity = 92/170 (54.12%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  140 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTG+STID  N++ RGQKIP+FS +GLPHN++A QI RQA
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEEKLDINGYPLNPVSRNPPNAFVQTGVSTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQA 173          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_HALMA (V-type ATP synthase beta chain OS=Haloarcula marismortui GN=atpB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.154e-47
Identity = 91/176 (51.70%), Postives = 125/176 (71.02%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDN 682
            EY+T+T ++GPLV ++  +   Y +IV I L DG  RRGQVLE   +   +QVFEGT GID    +V+F GE +K PV+ D+LGR+ +G+G+PID GP I+P+   DI G +INP  R YPEE IQTG+S ID MN++ RGQK+P+FSA+GLPHN++A QI RQA + +  +  D+
Sbjct:    3 EYQTITEISGPLVFVETDEPVGYDDIVEIELSDGETRRGQVLESASDYVAIQVFEGTEGIDRD-ASVRFLGETMKMPVTEDLLGRVMDGTGQPIDGGPEIVPDERRDIVGEAINPFSREYPEEFIQTGVSAIDGMNTLVRGQKLPIFSASGLPHNDLALQIARQATVPEEEDGEDD 177          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METM5 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=atpB PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.562e-46
Identity = 92/170 (54.12%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  140 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTG+STID  N++ RGQKIP+FS +GLPHN++A QI RQA
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSHDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGVSTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQA 173          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METTP (V-type ATP synthase beta chain OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=atpB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.039e-46
Identity = 89/173 (51.45%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK 673
            EY+T+T ++GPLV ++K +   Y E+V IR   G ++RGQVL+   E  VVQVFEGT G+ +K ++V+FTG+V+K P+S  ++GR+ +GSG+P D GPPI+PE   +I G++INP+ R  P   IQTGISTID  N++ RGQK+P+FS AGLPHN++A QI RQA ++   E+
Sbjct:    4 EYKTITEISGPLVFVEKTEPVGYGELVEIRTASGEVKRGQVLDTSDEIVVVQVFEGTGGL-SKDSSVRFTGDVIKMPLSPSIIGRVLSGSGRPRDGGPPIVPEVEREIIGAAINPASREKPRAFIQTGISTIDGTNTLVRGQKLPIFSGAGLPHNDVALQIARQAKVLGEAEE 175          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METLZ (V-type ATP synthase beta chain OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=atpB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.479e-46
Identity = 94/165 (56.97%), Postives = 121/165 (73.33%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EY+TV+ VAGPL+ ++K +   Y E V++ L DGTM+RGQVL+   +  VVQ FE T+G+  + T V+F GE  K PVS  MLGRI +G GKPID GP I+P+  LDI+G++INP  R  P + IQTGISTID  N++ RGQK+P+FS+AGLPHNEIA QI RQA
Sbjct:    3 EYKTVSKVAGPLLFVEKTEPVSYEEQVSLVLADGTMKRGQVLDTSEDLVVVQCFETTTGL-GRDTGVRFLGETFKMPVSKTMLGRILSGGGKPIDGGPAIVPDKRLDINGAAINPYARGTPRDFIQTGISTIDGTNTLVRGQKLPIFSSAGLPHNEIALQIARQA 166          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB1_CLOTE (V-type ATP synthase beta chain 1 OS=Clostridium tetani GN=atpB1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.479e-46
Identity = 90/165 (54.55%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRTV  V GPL+++D V+  K+ E+V I +  G +RRG+VLE++ +KA+VQ+FEG++GI+ K +  +F G+ L+  VS DMLGR+F+G G+P D GP I+PE  LDI+G  INP  R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDGVENVKFDELVEIEIQTGEIRRGRVLEINEDKALVQLFEGSAGINIKGSKAKFLGKPLEISVSEDMLGRVFDGLGRPKDEGPRIIPEKRLDINGIPINPVARNYPSEFIQTGISAIDGLNTLVRGQKLPVFSGSGLPHAQLAAQIARQA 168          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METVS (V-type ATP synthase beta chain OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=atpB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.543e-46
Identity = 92/170 (54.12%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  140 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            ++  +EY +V+ +AGPL++++ ++G  Y EIV+I   +G  R GQVLE   + AVVQVFEGTS ++   T V+FTGE  K  VS DMLGRIFNG+GKP+D GP I+ E  +DI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN +AAQI RQA
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIEGIEGIAYGEIVDITTPNGEKRTGQVLEAREDIAVVQVFEGTSELNTSETRVRFTGETAKIGVSKDMLGRIFNGAGKPLDGGPEIIAEKKVDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNMLAAQIARQA 173          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CLOB6 (V-type ATP synthase beta chain OS=Clostridium botulinum (strain 657 / Type Ba4) GN=atpB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.543e-46
Identity = 90/165 (54.55%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRTV  V GPL+++D+V+   + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+   DISG  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVESVSFDELVEIELHNGEKRRGRVLEINKDKALVQLFEGSAGINIKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDEKRDISGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
The following BLAST results are available for this feature:
BLAST of FC931138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
VATB_CLOBH7.009e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOB17.009e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_METMP9.154e-4754.12V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_HALMA9.154e-4751.70V-type ATP synthase beta chain OS=Haloarcula maris... [more]
VATB_METM51.562e-4654.12V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_METTP2.039e-4651.45V-type ATP synthase beta chain OS=Methanosaeta the... [more]
VATB_METLZ3.479e-4656.97V-type ATP synthase beta chain OS=Methanocorpuscul... [more]
VATB1_CLOTE3.479e-4654.55V-type ATP synthase beta chain 1 OS=Clostridium te... [more]
VATB_METVS4.543e-4654.12V-type ATP synthase beta chain OS=Methanococcus va... [more]
VATB_CLOB64.543e-4654.55V-type ATP synthase beta chain OS=Clostridium botu... [more]

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Properties
Property NameValue
Genbank descriptionC34101H05EF PostHarvP1 Citrus clementina cDNA clone C34101H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931138 ID=FC931138; Name=FC931138; organism=Citrus clementina; type=EST; length=686bp
GCATCTCTCATTGCCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCA
CTCACAGAGATCACAAGAAAGACCAAAAAAAAAGAAAAAAATTGAAAATG
GGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTACTCTGGAAGTCGC
CATGGAGTACAGAACGGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTG
ATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAATATTCGGTTGGGA
GATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGC
TGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGACAATAAATTTACAA
CTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGTCTCATTGGATATG
CTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTGATAATGGTCCCCC
AATTTTGCCAGAGGCTTACTTGGATATATCCGGAAGTTCTATCAACCCTA
GTGAGAGAACCTATCCTGAAGAGATGATACAGACAGGGATTTCTACCATT
GATGTGATGAACTCCATTGCTAGAGGACAAAAGATCCCTCTTTTTTCTGC
TGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATTTGTCGCCAGGCTG
GTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTC
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