FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PYRKO (Aspartate carbamoyltransferase OS=Pyrococcus kodakaraensis GN=pyrB PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.684e-48
Identity = 105/190 (55.26%), Postives = 136/190 (71.58%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGS-QILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            DVI  + F ++ +  + +VA  +E+ E N  GS    +G ++ATLF+EPSTRTRLSFESAM RLGG V+   +A   S   KGE+L DTI+TVE YSD+IV+RH   GAAR AA  A IPVINAGDG  QHPTQ LLD+YTI++  GK+DG+ +GL+GDL  GRTV SLA  LA Y DV++Y +SP +++
Sbjct:    7 DVISIRDFSKEDIEFVLKVAERLEE-ELNEKGSLDYARGKILATLFFEPSTRTRLSFESAMHRLGGSVIGFSSASSTS-VKKGESLADTIKTVEQYSDVIVIRHPMEGAARLAAEVAGIPVINAGDGSNQHPTQTLLDLYTIKKAFGKIDGLTIGLLGDLKYGRTVHSLAEALAFY-DVELYLISPELLR 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYR1_DICDI (Protein PYR1-3 OS=Dictyostelium discoideum GN=pyr1-3 PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 4.812e-48
Identity = 108/226 (47.79%), Postives = 145/226 (64.16%), Query Frame = 3
Query:    3 KQTQQLPSRNSIQCWAIETQSTPSFTIGKKFQLDD-------VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            + TQ LP   S    A+  +     T+   F + D       +   +QF+R  L+A+F +A EM  + K S GS +LKG ++ATLFYEPSTRT+ SF +AM+RLGG V+T +N    S  AKGE++ DTI+T+E Y D + MRH   G+   A   A  P+INAGDG G+HPTQALLDV+TI  E+G ++G+ + +VGDL +GRTV SL  LLA YQ VKI +VSP
Sbjct: 1885 QSTQHLPLVGSNLASAVLNKKED--TLQTAFNISDNSLAGKHIFSVKQFNRKQLHALFGIAHEMRILVKRSGGSDLLKGKVLATLFYEPSTRTQCSFTAAMQRLGGSVVTVDNVS--SSVAKGESIADTIQTLESYCDAVCMRHPAVGSVESAIQVAKKPIINAGDGVGEHPTQALLDVFTIREELGTVNGLTITVVGDLKHGRTVHSLVRLLANYQ-VKINYVSP 2105          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PYRCJ (Aspartate carbamoyltransferase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.072e-47
Identity = 103/191 (53.93%), Postives = 135/191 (70.68%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK*R 677
            DVI A+ F R+ L  +FE+A+ MEK  K+      L+G +MAT F+EPSTRTRLSFE AMKRLGG+V+   +A E +   KGETL DTIR ++ Y+D+IV+RH   GAA+ AA  A  PV+N GDG   HPTQA+LDVYTI RE G +DG+ VGL+GDL N RT+ SL   LA + +V++YF+SP  ++ R
Sbjct:    6 DVISARDFSREDLYELFEMAKYMEKFAKSRV--DFLRGKVMATAFFEPSTRTRLSFEVAMKRLGGDVIGFGSA-EGTSVEKGETLADTIRMLDAYADVIVIRHKYEGAAKLAAEVAESPVVNGGDGAYNHPTQAMLDVYTIWREFGHVDGLNVGLMGDLRNARTINSLVETLANF-NVRLYFISPEFLRPR 192          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ARCFU (Aspartate carbamoyltransferase OS=Archaeoglobus fulgidus GN=pyrB PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 99/184 (53.80%), Postives = 129/184 (70.11%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I     DR+ +N I + A E E + +     +IL+G ++  LF+EPSTRTR+SFE+AMKRLGG+V+    A+E S  AKGETL DTIR V GY D IV+RH   GAAR AA  + +PVINAGDG GQHPTQ LLD+YTI++E G+LDGI + L+GDL   RT+ SL   LA + D++IY +SP
Sbjct:    5 LISIGDLDREDINYILKKAEEFEDVARGEKKLRILEGKILGNLFFEPSTRTRMSFETAMKRLGGDVINM-TAQEASSIAKGETLADTIRVVSGYCDAIVIRHPLEGAARFAAENSSVPVINAGDGAGQHPTQTLLDLYTIKKECGRLDGITIALMGDLKYSRTIHSLIKALALF-DMRIYLISP 186          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METVS (Aspartate carbamoyltransferase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pyrB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.119e-47
Identity = 95/188 (50.53%), Postives = 130/188 (69.15%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            +I  +   RD +  I E + +ME +      S IL G ++ATLFYEPSTRTRLSFE+AMKRLGG V+   +    S   KGE+L DTI+ + GYSD+IV+RH   GAAR ++  + +PVINAGDG  QHPTQ LLD+YTI+RE+GK+DG+K+  +GDL  GRTV SL   L+ +++V++  +SP  +K
Sbjct:    4 LISMRDIGRDDILRILEESEKMEAVLNEKGHSDILNGKILATLFYEPSTRTRLSFETAMKRLGGNVIGFTDISNTS-VTKGESLTDTIKVISGYSDLIVIRHPSEGAARLSSEVSGVPVINAGDGSNQHPTQTLLDLYTIKREVGKIDGLKIAFIGDLKYGRTVHSLCQALSLFKNVELRLISPDELK 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PYRIL (Aspartate carbamoyltransferase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=pyrB PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.074e-47
Identity = 103/192 (53.65%), Postives = 136/192 (70.83%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK*RM 680
            DVI A+ F+R  L  +FE+A+ MEK  K+    + LKG +MA  F+EPSTRTRLSFE AMKRLGG+V+    A E +   KGETL DTIR ++ YSDIIV+RH   GAA+ AA  A  PVINAGDG   HPTQA+LDVYTI RE G +DG+ +GL+GDL + RT+ SL  +L  ++ V++Y +SP +++ R+
Sbjct:    6 DVISARDFNRVDLEELFEMAKYMEKYAKSRV--EFLKGKIMAVAFFEPSTRTRLSFEVAMKRLGGDVIGFWGA-EGTSVEKGETLADTIRMLDAYSDIIVIRHKYEGAAKLAAEVAESPVINAGDGAYNHPTQAMLDVYTIWREFGTVDGLNIGLLGDLRHARTINSLLEILTNFK-VRVYLISPELLRPRV 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_THEAC (Aspartate carbamoyltransferase OS=Thermoplasma acidophilum GN=pyrB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.320e-47
Identity = 101/188 (53.72%), Postives = 130/188 (69.15%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            V+  +  D D LN +F+++  M K  +    + +L+  +MATLFYEPSTRTRLSFESAM RLGG V+T  + +  S  AKGETL DTIR    YSDIIV+RH   GAAR A+  A  PVINAGDG GQHPTQ +LD+YTI+RE G +DG  + +VGDL  GRT+ SL   L+++ DV+I  VSP ++K
Sbjct:    7 VVSIEDVDIDDLNDLFDLSDSMLKTIEKGGSTDLLRNRIMATLFYEPSTRTRLSFESAMHRLGGSVITVSDVKTSS-VAKGETLADTIRMASSYSDIIVIRHPLEGAARLASKFANKPVINAGDGSGQHPTQTILDLYTIKRETGSIDGKTITMVGDLRYGRTIHSLIIALSRF-DVRINLVSPQILK 192          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METKA (Aspartate carbamoyltransferase OS=Methanopyrus kandleri GN=pyrB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 99/185 (53.51%), Postives = 128/185 (69.19%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            DVI  + F R  L  +   A EME++ +   G   L G ++ATLF+ PSTRTRLSFESAM RLGG+V++    +E +  AKGE L DT+RTVE Y D+IV+RH + GAAR AA    +PVINAGDG  QHPTQ  LD+YTI +E G++ G+++GL+GDL  GRTV SLAY LA +   KI+ +SP
Sbjct:    8 DVISVRDFTRKELEELLSHAEEMERVYERG-GDDRLSGKILATLFFSPSTRTRLSFESAMHRLGGDVISL-GGKEAASTAKGENLADTVRTVEHYCDVIVLRHPKEGAARLAAELTDVPVINAGDGANQHPTQTFLDLYTIMKEKGRIGGLRIGLLGDLKYGRTVHSLAYALALF-GAKIHLISP 189          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METS3 (Aspartate carbamoyltransferase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=pyrB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.022e-46
Identity = 92/191 (48.17%), Postives = 132/191 (69.11%), Query Frame = 3
Query:   87 KKFQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            K F+L  +I  + F+R  ++ I + A ++E I K+      LKG ++  +F+EPSTRTRLSFE++MKRLGG  +  EN R  S  +KGE++ DT +  EGYSD +V+RH   G ++  +    +PVINAGDG GQHPTQ LLD+YTI++E+G++D +K+ LVGDL  GRTV SL+  L  Y +V++YFV+P
Sbjct:    3 KIFELKSIISIKDFERKDIDYILDEASKLEDIAKSKECCDELKGKILGLMFFEPSTRTRLSFETSMKRLGGNCIGIENTRSCS-VSKGESIADTAKMFEGYSDALVIRHELEGVSKFISDIVDVPVINAGDGAGQHPTQTLLDLYTIKKELGQIDNLKIALVGDLKFGRTVHSLSNALGLYDNVELYFVAP 192          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PYRAE (Aspartate carbamoyltransferase OS=Pyrobaculum aerophilum GN=pyrB PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.882e-46
Identity = 100/191 (52.36%), Postives = 132/191 (69.11%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK*R 677
            DVI ++ F R  L  +F+VA++ME+  K+    ++LKG +M   F+EPSTRTRLSFE AMKRLGG+V+    A E +   KGETL DTIR ++ YSDIIV+RH   GAA+ AA  A  PVIN GDG   HPTQA+LDVYTI RE G +DG+ +G+VGDL + RTV SL   L  + DV+++ +SP  ++ R
Sbjct:    6 DVISSRDFTRHDLEELFDVAKQMERYAKSRV--ELLKGKMMGVAFFEPSTRTRLSFEVAMKRLGGDVIGFSGA-EGTSVEKGETLADTIRMLDAYSDIIVIRHKYEGAAKLAAEIAESPVINGGDGAFNHPTQAMLDVYTIWREFGYVDGLNIGIVGDLRHARTVNSLLETLVNF-DVRVFLISPEYLRPR 192          
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_PYRKO3.684e-4855.26Aspartate carbamoyltransferase OS=Pyrococcus kodak... [more]
PYR1_DICDI4.812e-4847.79Protein PYR1-3 OS=Dictyostelium discoideum GN=pyr1... [more]
PYRB_PYRCJ1.072e-4753.93Aspartate carbamoyltransferase OS=Pyrobaculum cali... [more]
PYRB_ARCFU2.388e-4753.80Aspartate carbamoyltransferase OS=Archaeoglobus fu... [more]
PYRB_METVS3.119e-4750.53Aspartate carbamoyltransferase OS=Methanococcus va... [more]
PYRB_PYRIL4.074e-4753.65Aspartate carbamoyltransferase OS=Pyrobaculum isla... [more]
PYRB_THEAC5.320e-4753.72Aspartate carbamoyltransferase OS=Thermoplasma aci... [more]
PYRB_METKA1.185e-4653.51Aspartate carbamoyltransferase OS=Methanopyrus kan... [more]
PYRB_METS32.022e-4648.17Aspartate carbamoyltransferase OS=Methanobrevibact... [more]
PYRB_PYRAE5.882e-4652.36Aspartate carbamoyltransferase OS=Pyrobaculum aero... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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