FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_META3 (Aspartate carbamoyltransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pyrB PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.882e-46
Identity = 94/180 (52.22%), Postives = 129/180 (71.67%), Query Frame = 3
Query:  132 RDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            ++ILN I E A +ME++  +   S I+ G ++ATLFYEPSTRTRLSFE+AMKRLGG V+   +    S   KGETL DTI+ + GY+D+IVMRH   GA R A   + IP+INAGDG  QHP+Q +LD+YTI+REIG +D IK+  +GDL  GRTV SL + L+ +++++I F++P  +K
Sbjct:   13 KEILN-ILEEAEKMEELLNSEKHSNIMNGKILATLFYEPSTRTRLSFETAMKRLGGTVVGFTDIANTS-VMKGETLPDTIKVINGYADLIVMRHPSDGAPRLACEYSNIPIINAGDGSNQHPSQTMLDLYTIKREIGHIDNIKIAFIGDLKYGRTVHSLCHALSFFENIEIVFIAPKELK 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_THEVO (Aspartate carbamoyltransferase OS=Thermoplasma volcanium GN=pyrB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.494e-45
Identity = 95/188 (50.53%), Postives = 128/188 (68.09%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            V+       D L  IF+++  M K  ++   + +L   +MATLFYEPSTRTRLSFESAM RLGG V+T  + +  S AAKGETL DT+R    YSDIIV+RH   GAAR A+     P+INAGDG GQHPTQ +LD++TI++E+G +DG  + +VGDL  GRT+ SL   L+++ DVK+  VSP +++
Sbjct:    7 VVSIDDVQNDDLFEIFDLSESMLKTIESKGNAPLLTNKIMATLFYEPSTRTRLSFESAMHRLGGSVITVSDTKTSS-AAKGETLADTVRMASSYSDIIVIRHPLEGAARLASRFTSKPIINAGDGSGQHPTQTILDLFTIKKELGSIDGKVITMVGDLRYGRTIHSLIIALSRF-DVKVNLVSPEILR 192          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_CALMQ (Aspartate carbamoyltransferase OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=pyrB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.494e-45
Identity = 102/191 (53.40%), Postives = 130/191 (68.06%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK*R 677
            DVI +  F RD L  +F  A+EME   K+     IL G +MAT F+EPSTRTRLSFE+AM RLGG VL   +  E S  AKGE+L DTIR ++ YSDIIV+RH   GAA+ AA  A +PVINAGDG   HPTQA+LD YTI RE G+LD + +G++GDL   R V SL  LL+ ++ VK+  +SP +++ R
Sbjct:    7 DVISSLDFTRDDLMQLFYEAKEMENYAKSK--LNILDGKIMATAFFEPSTRTRLSFETAMLRLGGRVLGFGSV-EASSVAKGESLGDTIRMLDSYSDIIVIRHSLEGAAKYAADIATVPVINAGDGTQNHPTQAMLDAYTIWREYGRLDDLTIGILGDLRYARVVTSLVQLLSNFK-VKLRLISPEILRPR 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_THENV (Aspartate carbamoyltransferase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=pyrB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.449e-44
Identity = 98/192 (51.04%), Postives = 131/192 (68.23%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK*RM 680
            DVI A+ F R  L  +FE AR MEK  K+    + L+G +MA  F+EPSTRTRLSFE AM+RLGG+V+    A E +   KGETL DT++ ++ YSD+IV+RH   GA++ AA  A  PVIN GDG   HPTQA+LDVYT+ RE G +DG+ VGL+GDL + RTV SL   L  ++ V++Y +SP  ++ R+
Sbjct:    6 DVISARDFGRRDLEELFETARYMEKYSKSR--LEFLRGRVMAVAFFEPSTRTRLSFEVAMRRLGGDVIGFWGA-EGTSVEKGETLVDTVKMLDAYSDVIVVRHRYEGASKLAAEVAESPVINGGDGAFNHPTQAMLDVYTMWREFGTVDGLNVGLIGDLRHARTVNSLLETLTNFR-VRVYLISPEYLRPRV 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METST (Aspartate carbamoyltransferase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pyrB PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.471e-44
Identity = 95/190 (50.00%), Postives = 127/190 (66.84%), Query Frame = 3
Query:   90 KFQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            KF L+++I  + F +  +  I  +A EME I K+        G L+  +FYEPSTRTRLSFE+AMKRLGG+V+   N ++ +   KGE L DT + V  Y+D IV+RH   GAAR  +    +PVINAGDG GQHPTQ +LD+YTI+R +G+L  +K+ LVGDL  GRTV SL Y LA + +V+I F+SP
Sbjct:    2 KFSLENIISIRDFKKSDVEYILNLAEEMEPIAKSQKVCHEKDGKLLGVMFYEPSTRTRLSFETAMKRLGGDVVGF-NQKQGTSIQKGEVLYDTAQIVSQYTDAIVLRHDMEGAARFVSNIVDVPVINAGDGAGQHPTQTMLDLYTIKRTLGELKNLKIALVGDLKYGRTVHSLVYALAMF-NVEIVFISP 189          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_LEPIC (Aspartate carbamoyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=pyrB PE=3 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.471e-44
Identity = 95/185 (51.35%), Postives = 131/185 (70.81%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +V++ +QF +  L+ +    R ME++ + +    IL G L+A+LF+E STRTRLSFE+AM+RLGG V++T    +FS  +KGETL DT++ VE Y+DI V+RH   G++R AA    IPVINAGDG GQHPTQA+LD+YTI  E G LDG+KV  +GDL  GRT+ SL  LL  Y+ V+++ +SP
Sbjct:    7 NVLDTEQFSKPDLDFLIGKIRVMERLVEQNKAFGILTGKLLASLFFEASTRTRLSFEAAMERLGGRVISTVGF-QFSSISKGETLYDTMKMVEAYADIAVIRHPVEGSSRIAAGAVKIPVINAGDGAGQHPTQAILDLYTIISEKGTLDGLKVAFIGDLKYGRTIHSLINLLRHYK-VRLFLISP 189          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METTP (Aspartate carbamoyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=pyrB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.215e-44
Identity = 97/188 (51.60%), Postives = 130/188 (69.15%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            V+  + F R+ ++ I E A  +E   +   GS IL+G ++A +F+EPSTRTR+SFE+AMKRLGG+ +   +A E S  AKGE+L DTIR V GY+D IV+RH + G+AR AA  + +PV+NAGDG G HPTQ LLD+YTI++E   LD + + LVGDL  GRTV SLAY L+ Y    IY VSP  ++
Sbjct:    7 VLSMKDFSREEIDEILETAESLEPYARGK-GSDILEGKILALMFFEPSTRTRMSFETAMKRLGGKTINLGSA-EASSIAKGESLADTIRVVGGYADAIVIRHPKEGSARLAAEFSPVPVLNAGDGAGHHPTQTLLDLYTIKKE-SHLDDLSIALVGDLKYGRTVHSLAYALSLY-GADIYLVSPPTLR 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_LEPBL (Aspartate carbamoyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=pyrB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.215e-44
Identity = 93/185 (50.27%), Postives = 130/185 (70.27%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +V++ +QF +  L+ + +  ++ME + +      IL G L+A+LF+E STRTRLSFE+AM+RLGG V++T    +FS  +KGETL DT++ VE Y+DI V+RH   G++R AA    IPV+NAGDG GQHPTQA+LD+YTI  E G LDG+ V  +GDL  GRT+ SL  LL  Y+ V++Y +SP
Sbjct:    7 NVLDTEQFSKSDLDFLIKKIKDMEHLVERHKAFGILTGKLLASLFFEASTRTRLSFEAAMERLGGRVISTVGF-QFSSISKGETLYDTMKMVEAYADIAVIRHPVEGSSRIAAGAVKIPVVNAGDGAGQHPTQAILDLYTIISEKGTLDGLSVAFIGDLKYGRTIHSLINLLRHYK-VRLYLISP 189          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_LEPBJ (Aspartate carbamoyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=pyrB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.215e-44
Identity = 93/185 (50.27%), Postives = 130/185 (70.27%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +V++ +QF +  L+ + +  ++ME + +      IL G L+A+LF+E STRTRLSFE+AM+RLGG V++T    +FS  +KGETL DT++ VE Y+DI V+RH   G++R AA    IPV+NAGDG GQHPTQA+LD+YTI  E G LDG+ V  +GDL  GRT+ SL  LL  Y+ V++Y +SP
Sbjct:    7 NVLDTEQFSKSDLDFLIKKIKDMEHLVERHKAFGILTGKLLASLFFEASTRTRLSFEAAMERLGGRVISTVGF-QFSSISKGETLYDTMKMVEAYADIAVIRHPVEGSSRIAAGAVKIPVVNAGDGAGQHPTQAILDLYTIISEKGTLDGLSVAFIGDLKYGRTIHSLINLLRHYK-VRLYLISP 189          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METBU (Aspartate carbamoyltransferase OS=Methanococcoides burtonii (strain DSM 6242) GN=pyrB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.506e-44
Identity = 93/184 (50.54%), Postives = 125/184 (67.93%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I  + F RD+++ +   A  +E I K    S +LKG ++  LF+EPSTRTR+SFE+AM RLGG+VL+  +  + S  AKGETL DTIR V GY++ IV+RH + GAA+ A+  + +P++NAGDG G HPTQ  LD+YTI RE   LDG+K+ L GDL  GRTV SL Y L+ Y   +I  VSP
Sbjct:    8 IISMKSFSRDMIDHVLNTAEMLEPIAKGKTKSDLLKGKILGVLFFEPSTRTRMSFETAMMRLGGDVLSLGSV-DASSIAKGETLADTIRVVNGYANAIVLRHNKEGAAQLASEFSSVPILNAGDGAGHHPTQTFLDLYTIRRE-SHLDGLKIALAGDLKYGRTVHSLCYALSLY-GAEITLVSP 188          
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_META35.882e-4652.22Aspartate carbamoyltransferase OS=Methanococcus ae... [more]
PYRB_THEVO8.494e-4550.53Aspartate carbamoyltransferase OS=Thermoplasma vol... [more]
PYRB_CALMQ8.494e-4553.40Aspartate carbamoyltransferase OS=Caldivirga maqui... [more]
PYRB_THENV1.449e-4451.04Aspartate carbamoyltransferase OS=Thermoproteus ne... [more]
PYRB_METST2.471e-4450.00Aspartate carbamoyltransferase OS=Methanosphaera s... [more]
PYRB_LEPIC2.471e-4451.35Aspartate carbamoyltransferase OS=Leptospira inter... [more]
PYRB_METTP4.215e-4451.60Aspartate carbamoyltransferase OS=Methanosaeta the... [more]
PYRB_LEPBL4.215e-4450.27Aspartate carbamoyltransferase OS=Leptospira borgp... [more]
PYRB_LEPBJ4.215e-4450.27Aspartate carbamoyltransferase OS=Leptospira borgp... [more]
PYRB_METBU5.506e-4450.54Aspartate carbamoyltransferase OS=Methanococcoides... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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