FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PYRAR (Aspartate carbamoyltransferase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=pyrB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 99/191 (51.83%), Postives = 128/191 (67.02%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK*R 677
            DVI  + F R  L  +FE A+ MEK  K+      LKG +MA  F+EPSTRTRLSFE+AM+RLGG+V+    A E +   KGETL DTIR ++ YS+IIV+RH   GAA+ AA  A  PVIN GDG   HPTQA+LD+YTI RE G +DG+ +GL+GDL   RT+ SL   LA + DV+ + +SP  ++ R
Sbjct:    6 DVITMRDFGRGELEELFETAKYMEKYAKSRV--DFLKGKIMAVAFFEPSTRTRLSFETAMRRLGGDVIGFWGA-EGTSVEKGETLADTIRMLDAYSNIIVIRHKLEGAAKLAAEVAESPVINGGDGAFNHPTQAMLDLYTIWREFGHIDGLNIGLMGDLRYARTINSLLEALANF-DVRTFLISPEYLRPR 192          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_LEPIN (Aspartate carbamoyltransferase OS=Leptospira interrogans GN=pyrB PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.227e-43
Identity = 94/185 (50.81%), Postives = 130/185 (70.27%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +V++ +QF +  L+ +    R ME++ + +    IL G L+A+LF+E STRTRLSFE+AM+RLGG V++T    +FS  +KGETL DT++ VE Y+DI V+RH   G++R AA    IPVINAGDG GQHPTQA+LD+YTI  E G LDG+ V  +GDL  GRT+ SL  LL  Y+ V+++ +SP
Sbjct:    7 NVLDTEQFSKPDLDFLIGKIRVMERLVEQNKAFGILTGKLLASLFFEASTRTRLSFEAAMERLGGRVISTVGF-QFSSISKGETLYDTMKMVEAYADIAVIRHPVEGSSRIAAGAVKIPVINAGDGAGQHPTQAILDLYTIISEKGTLDGLTVAFIGDLKYGRTIHSLINLLRHYK-VRLFLISP 189          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_LEPBP (Aspartate carbamoyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=pyrB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.732e-43
Identity = 91/185 (49.19%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++++  QF +D LN +      M  + ++     IL G L+A+LF+E STRTR+SFE+AM+RLGG +++T    +FS  +KGETL DT++ +E Y DI V+RH   G++R AA    IPVINAGDG GQHPTQALLD+YTI  E GK+DG+ +  +GDL  GRT+ SL  LL  Y  V +Y +SP
Sbjct:    8 NILDTLQFSKDDLNYLITKTNRMNALHESGKAFGILHGKLLASLFFEASTRTRMSFEAAMERLGGRLISTVGF-QFSSISKGETLYDTMKMIEAYCDIAVIRHPVEGSSRIAAGAVNIPVINAGDGAGQHPTQALLDLYTIVSEKGKIDGLNIAFIGDLKYGRTIHSLINLLRHY-PVHLYLISP 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_LEPBA (Aspartate carbamoyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=pyrB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.732e-43
Identity = 91/185 (49.19%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++++  QF +D LN +      M  + ++     IL G L+A+LF+E STRTR+SFE+AM+RLGG +++T    +FS  +KGETL DT++ +E Y DI V+RH   G++R AA    IPVINAGDG GQHPTQALLD+YTI  E GK+DG+ +  +GDL  GRT+ SL  LL  Y  V +Y +SP
Sbjct:    8 NILDTLQFSKDDLNYLITKTNRMNALHESGKAFGILHGKLLASLFFEASTRTRMSFEAAMERLGGRLISTVGF-QFSSISKGETLYDTMKMIEAYCDIAVIRHPVEGSSRIAAGAVNIPVINAGDGAGQHPTQALLDLYTIVSEKGKIDGLNIAFIGDLKYGRTIHSLINLLRHY-PVHLYLISP 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METMP (Aspartate carbamoyltransferase OS=Methanococcus maripaludis GN=pyrB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 89/188 (47.34%), Postives = 123/188 (65.43%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            +I  +   R+ +  I + +  ME I         L G ++ATLFYEPSTRTRLSFE+AMKRLGG V+   +    S   KGE+L DTI+ + GYSD+I +RH   GAAR ++  + +PVINAGDG  QHPTQ LLD+YTI+RE+G ++ +K+  +GDL  GRTV SL   L+ ++ V+I  +SP  +K
Sbjct:    4 LISMRDIGREEILNILDESERMEAILNEKGHCDFLNGRILATLFYEPSTRTRLSFETAMKRLGGNVIGFTDISNTS-VTKGESLADTIKVISGYSDLIAIRHPSEGAARLSSENSKVPVINAGDGSNQHPTQTLLDLYTIKREVGHIENLKIAFIGDLKYGRTVHSLCQALSLFKGVEIKLISPDELK 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METM6 (Aspartate carbamoyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pyrB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 89/188 (47.34%), Postives = 123/188 (65.43%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            +I  +   R+ +  I + +  ME I         L G ++ATLFYEPSTRTRLSFE+AMKRLGG V+   +    S   KGE+L DTI+ + GYSD+I +RH   GAAR ++  + +PVINAGDG  QHPTQ LLD+YTI+RE+G ++ +K+  +GDL  GRTV SL   L+ ++ V+I  +SP  +K
Sbjct:    4 LISMRDIGREEILNILDESERMEAILNEKGHCDFLNGRILATLFYEPSTRTRLSFETAMKRLGGNVIGFTDISNTS-VTKGESLADTIKVISGYSDLIAIRHPSEGAARLSSENSKVPVINAGDGSNQHPTQTLLDLYTIKREVGHIENLKIAFIGDLKYGRTVHSLCQALSLFKGVEIKLISPDELK 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METM7 (Aspartate carbamoyltransferase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pyrB PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43
Identity = 89/179 (49.72%), Postives = 123/179 (68.72%), Query Frame = 3
Query:  135 DILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            +ILN + E + +ME I   +     L G ++ATLFYEPSTRTRLSFE+AMKRLGG V+   +    S   KGE+L DTI+ + GYSD+I +RH   GAAR ++  + +PVINAGDG  QHPTQ LLD+YTI+RE+G ++ +K+  +GDL  GRTV SL   L+ ++ V+I  ++P  +K
Sbjct:   14 EILNILNE-SEKMEAILNENGHCDFLNGRILATLFYEPSTRTRLSFETAMKRLGGNVIGFTDISNTS-VTKGESLADTIKVISGYSDLIAIRHPSEGAARLSSENSKVPVINAGDGSNQHPTQTLLDLYTIKREVGHIENLKIAFIGDLKYGRTVHSLCQALSLFKSVEIKLIAPDELK 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METM5 (Aspartate carbamoyltransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pyrB PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43
Identity = 89/188 (47.34%), Postives = 122/188 (64.89%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            +I  +   R+ +  I + +  ME I         L G ++ATLFYEPSTRTRLSFE+AMKRLGG V+   +    S   KGE+L DTI+ + GYSD+I +RH   GAAR +   + +PVINAGDG  QHPTQ LLD+YTI+RE+G ++ +K+  +GDL  GRTV SL   L+ ++ V+I  +SP  +K
Sbjct:    4 LISMRDIGREEILNILDESERMEAILNEKGHCDFLNGRILATLFYEPSTRTRLSFETAMKRLGGNVIGFTDISNTS-VTKGESLADTIKVISGYSDLIAIRHPSEGAARLSGENSKVPVINAGDGSNQHPTQTLLDLYTIKREVGHIENLKIAFIGDLKYGRTVHSLCQALSLFKGVEIKLISPEELK 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_UNCMA (Aspartate carbamoyltransferase OS=Uncultured methanogenic archaeon RC-I GN=pyrB PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 95/194 (48.97%), Postives = 129/194 (66.49%), Query Frame = 3
Query:   93 FQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGK-LDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            F+   +I  + F RD ++ I + A  +E   +   GS +L G ++ATLFYEPSTRTRLSF++A+KRLGG  +  ++A   S   KGETL DTIR ++ Y+D IV+RH + GAAR A+  + +PVINAGDG G HPTQ LLD+YT+ +E  K +  + V +VGDL  GRTV SLAY L+ Y    + FVSP  +K
Sbjct:    3 FERKHIISTKDFSRDEIDFILDRAARLEPFARK--GSTVLNGSIVATLFYEPSTRTRLSFDTAVKRLGGTTIGFDSAASSS-TVKGETLADTIRIIDSYADAIVLRHPKEGAARMASEISRVPVINAGDGAGHHPTQTLLDLYTMRKECKKAICDLNVAIVGDLKYGRTVHSLAYALSLY-GANLSFVSPEQLK 192          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PICTO (Aspartate carbamoyltransferase OS=Picrophilus torridus GN=pyrB PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 93/190 (48.95%), Postives = 126/190 (66.32%), Query Frame = 3
Query:  102 DDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            + VI       + LN IF  A  M    KN    + + G +MATLF+EPSTRTRLSFESAM+RLGG V++  +++  S  AKGETL DT R V  YSDIIV+RH   GAAR     +  PVINAGDG G+HPTQ L+D+YTI++  G ++ +++ ++GDL  GRTV SL   L++Y +V+I  VSP +++
Sbjct:    5 NSVISINDLSDEDLNLIFNTADSMAGNLKNGSQIKTMSGRIMATLFFEPSTRTRLSFESAMQRLGGSVISMADSKSSS-TAKGETLADTTRMVSSYSDIIVVRHPLEGAARLVQKFSSRPVINAGDGSGEHPTQTLVDLYTIKKSFGDINNLEISIIGDLRYGRTVHSLLLALSRY-NVRINLVSPDLLR 192          
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_PYRAR9.391e-4451.83Aspartate carbamoyltransferase OS=Pyrobaculum arse... [more]
PYRB_LEPIN1.227e-4350.81Aspartate carbamoyltransferase OS=Leptospira inter... [more]
PYRB_LEPBP2.732e-4349.19Aspartate carbamoyltransferase OS=Leptospira bifle... [more]
PYRB_LEPBA2.732e-4349.19Aspartate carbamoyltransferase OS=Leptospira bifle... [more]
PYRB_METMP4.661e-4347.34Aspartate carbamoyltransferase OS=Methanococcus ma... [more]
PYRB_METM64.661e-4347.34Aspartate carbamoyltransferase OS=Methanococcus ma... [more]
PYRB_METM77.950e-4349.72Aspartate carbamoyltransferase OS=Methanococcus ma... [more]
PYRB_METM57.950e-4347.34Aspartate carbamoyltransferase OS=Methanococcus ma... [more]
PYRB_UNCMA2.313e-4248.97Aspartate carbamoyltransferase OS=Uncultured metha... [more]
PYRB_PICTO2.313e-4248.95Aspartate carbamoyltransferase OS=Picrophilus torr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
back to top