FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METTH (Aspartate carbamoyltransferase OS=Methanobacterium thermoautotrophicum GN=pyrB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-42
Identity = 93/190 (48.95%), Postives = 123/190 (64.74%), Query Frame = 3
Query:  102 DDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            ++VI  + F R+ +  I   A +ME        S  L+G ++  +FYEPSTRTRLSFE+AMKRLGG+V+   +    S A KGE+L DT   +  YSD IV+RH   GAAR  +    +PVINAGDG GQHPTQ LLD+YT++R  G++  ++V LVGDL  GRTV SLAY LA +    + FVSP V++
Sbjct:    3 ENVISIKDFKREDIEFILREAEKMEPFASGEKSSSALRGKILGMMFYEPSTRTRLSFETAMKRLGGDVVGFADTGATS-AVKGESLADTAMMLSAYSDAIVIRHNLEGAARYISDVVDVPVINAGDGAGQHPTQTLLDLYTMKRFFGRIGSLRVALVGDLKYGRTVHSLAYALAVF-GASMSFVSPPVLR 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_CLOD6 (Aspartate carbamoyltransferase OS=Clostridium difficile (strain 630) GN=pyrB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-42
Identity = 95/189 (50.26%), Postives = 126/189 (66.67%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            ++I+ + F  + ++ I E+A+++  I+  S  S+I +G L+ATLFYEPSTRTRLSFESAM RLGG V+        S A+KGETL DT+R V GY DII MRH +SGAA  AA    +P INAGDG  QHPTQ L D+ TI+   G L+   +GL GDL  GRTV SL   +A+Y++ K  F++P  +K
Sbjct:    6 NLIQPEDFSIEEIDEILELAQKI--IDNPSKYSRICEGKLLATLFYEPSTRTRLSFESAMNRLGGRVVGFSEPNSSS-ASKGETLGDTMRIVSGYVDIIAMRHPQSGAASEAARYTEVPFINAGDGKNQHPTQTLTDLLTIKSLKGTLESHTIGLCGDLKYGRTVHSLVKAMARYKNTKFVFIAPEELK 191          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYR1_DROME (CAD protein OS=Drosophila melanogaster GN=r PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 5.153e-42
Identity = 91/201 (45.27%), Postives = 135/201 (67.16%), Query Frame = 3
Query:   60 QSTPSFTIGKKFQLDDVIEAQQFDRDILNAIFEVAREME-KIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++T S  +        ++    F++D LN IF +A+ ++ +  K+ P  ++L G +MA++FYE STRT+ SF +AM RLGG V++ +N    S   KGE+LED+I+ V  Y+D++V+RH   GA  RAAT +  P+INAGDG G+HPTQALLD++TI  E G ++G+ + +VGDL NGRTV SLA LL  Y +V + +V+P
Sbjct: 1904 RTTNSNPVAHSLMGKHILAVDMFNKDHLNDIFNLAQLLKLRGTKDRPVDELLPGKIMASVFYEVSTRTQCSFAAAMLRLGGRVISMDNIT--SSVKKGESLEDSIKVVSSYADVVVLRHPSPGAVARAATFSRKPLINAGDGVGEHPTQALLDIFTIREEFGTVNGLTITMVGDLKNGRTVHSLARLLTLY-NVNLQYVAP 2101          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METPE (Aspartate carbamoyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pyrB PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.148e-41
Identity = 98/187 (52.41%), Postives = 124/187 (66.31%), Query Frame = 3
Query:   99 LDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            + D I  + FDR    AI  +  E E+I+ +      +KG ++A LF+EPSTRTR+SFE+AM RLGG  LT  +  E S  AKGETL DTIR V GY D IV+RH   GAAR A+  + +PVINAGDG GQHP+Q LLD+YTI R+   +DGI +GL+GDL  GRT  SL Y L+ Y D  I+ V+P
Sbjct:    1 MKDFISIRDFDRA---AIDRLIAEAERIDHHQYDPLEMKGKILALLFFEPSTRTRMSFEAAMARLGGTSLTLSSF-EASSMAKGETLADTIRVVSGYVDAIVLRHPREGAARLASEVSSVPVINAGDGAGQHPSQTLLDLYTI-RQSMPIDGINIGLLGDLRYGRTTHSLTYALSLY-DAVIHTVAP 181          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_VIBPA (Aspartate carbamoyltransferase OS=Vibrio parahaemolyticus GN=pyrB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.499e-41
Identity = 87/185 (47.03%), Postives = 122/185 (65.95%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I   +  R+ L  I E A  ++K     P  +++K  ++A+ F+EPSTRTRLSFE+A++R+GG+V+  +N    S A KGETL D+++ +  Y D  VMRH + GAAR A+  +  +PVINAGDG  QHPTQ LLD+YTI    G+LD + V  VGDL  GRTV SL   LAK+ +++ YFV+P
Sbjct:   10 IISIPELSREELELIVETAGNLKK----EPRPELIKNKVVASCFFEPSTRTRLSFETAIQRIGGDVIGFDNDGNTSLAKKGETLSDSVQVISSYVDAFVMRHPQEGAARLASEFSNGVPVINAGDGANQHPTQTLLDLYTIAETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFNNIRFYFVAP 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_HYPBU (Aspartate carbamoyltransferase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=pyrB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.499e-41
Identity = 90/191 (47.12%), Postives = 121/191 (63.35%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK*R 677
            DVI    FDRD L  +FEVA +   + +      +L+GY++A  F+EPSTRTRLSFE+A KRLG + +   +    S A KGETL DTIR ++ Y+D+IV+RH   GAA  AA  A  PVINAGDG   HPTQA+LD+YT+ +  G +DG+  G++GDL  GR   S    L  Y+   IY +SP +++ R
Sbjct:   11 DVISILDFDRDSLEQLFEVADKFSSLLRERGRIPLLEGYIVALAFFEPSTRTRLSFETAAKRLGADTIGFTSEEAISIA-KGETLADTIRMLDSYADMIVLRHRYEGAALYAAEIAEHPVINAGDGKQHHPTQAMLDLYTVRKLFGTIDGLTYGVLGDLRYGRAASSFILALTIYRPRMIYLISPPLLRVR 200          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_VIBHB (Aspartate carbamoyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=pyrB PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41
Identity = 85/185 (45.95%), Postives = 122/185 (65.95%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I   +  R+ L  I E A +++K     P  +++K  ++A+ F+EPSTRTRLSFE+A++R+GG+V+  +N    S A KGETL D+++ +  Y D  VMRH + GAAR A+  +  +PVINAGDG  QHPTQ LLD+YTI     +LD + V  VGDL  GRTV SL   LAK+ +++ +FV+P
Sbjct:   10 IISIPELSREELELIVETAGQLKK----EPRPELIKNKVVASCFFEPSTRTRLSFETAIQRIGGDVIGFDNGGNTSLAKKGETLSDSVQVISSYVDAFVMRHPQEGAARLASEFSNGVPVINAGDGANQHPTQTLLDLYTIAETQSRLDNLNVAFVGDLKYGRTVHSLTQALAKFNNIRFFFVAP 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METMA (Aspartate carbamoyltransferase OS=Methanosarcina mazei GN=pyrB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.658e-40
Identity = 89/189 (47.09%), Postives = 124/189 (65.61%), Query Frame = 3
Query:   93 FQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            F+   VI  + F R+ ++ I ++A ++E + +    S++L G +++ LF+EPSTRTRLSFE A +RLGG+VL+  +  E S   KGE L DTIR +  Y+D+IV+RH   G+AR A   A +PVIN GDG   HPTQ  LD+YTI RE   L+G+K+ + GDL  GRTV SL Y L+ Y   ++ FVSP
Sbjct:    4 FKNRHVISMKDFSREEIDYILDIAEKLEPVARGEERSRLLDGKIISLLFFEPSTRTRLSFEVATRRLGGQVLSLGSV-EASSVMKGENLADTIRVISKYADLIVLRHPLDGSARMATEFAAVPVINGGDGSVHHPTQTFLDLYTIRRE-SHLEGLKIAMAGDLKYGRTVHSLCYALSLY-GAEMTFVSP 189          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METBF (Aspartate carbamoyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=pyrB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.658e-40
Identity = 91/189 (48.15%), Postives = 123/189 (65.08%), Query Frame = 3
Query:   93 FQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            F+  +VI  + F R  +N I + A ++E + +    S++L G ++A LF+EPSTRTRLSFESA +RLGG+VL   +  E S   KGE L DTIR +  Y+D+IV+RH   G+AR AA  A +P+IN GDG   HPTQ  LD+YTI RE   L+G+K+ + GDL  GRTV SL + L+ Y   +I  VSP
Sbjct:    3 FKNRNVISMKDFSRKEINYILDTAEKLEPVARGKKRSRLLDGKIIALLFFEPSTRTRLSFESAAQRLGGQVLNLGSV-EASSVMKGENLADTIRVISKYADLIVLRHPLDGSARMAAEFASVPIINGGDGSLHHPTQTFLDLYTIRRE-SHLEGLKIAMAGDLKYGRTVHSLCHALSLY-GAEITLVSP 188          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_VIBS2 (Aspartate carbamoyltransferase catalytic chain OS=Vibrio sp. (strain 2693) GN=pyrB PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.165e-40
Identity = 86/184 (46.74%), Postives = 118/184 (64.13%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++      R+ L  I + A +++K     P  ++LK  ++A+ F+E STRTRLSFE+A++RLGG V+  +NA   S A KGETL D+I  +  Y D  VMRH + GAAR A+  + +PVIN GDG  QHPTQ LLD+++I    G LD + + LVGDL  GRTV SLA  LAK+   K YF++P
Sbjct:   10 IVSINDISRNELELIVKTAAKLKK----QPQPELLKNKVIASCFFEASTRTRLSFETAIQRLGGTVIGFDNASNTSLAKKGETLADSISVISSYVDAFVMRHPQEGAARLASEFSNVPVINGGDGSNQHPTQTLLDLFSIYETQGCLDNLNIALVGDLKYGRTVHSLAQALAKFSGCKFYFIAP 189          
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_METTH3.946e-4248.95Aspartate carbamoyltransferase OS=Methanobacterium... [more]
PYRB_CLOD63.946e-4250.26Aspartate carbamoyltransferase OS=Clostridium diff... [more]
PYR1_DROME5.153e-4245.27CAD protein OS=Drosophila melanogaster GN=r PE=1 S... [more]
PYRB_METPE1.148e-4152.41Aspartate carbamoyltransferase OS=Methanosphaerula... [more]
PYRB_VIBPA1.499e-4147.03Aspartate carbamoyltransferase OS=Vibrio parahaemo... [more]
PYRB_HYPBU1.499e-4147.12Aspartate carbamoyltransferase OS=Hyperthermus but... [more]
PYRB_VIBHB7.441e-4145.95Aspartate carbamoyltransferase OS=Vibrio harveyi (... [more]
PYRB_METMA1.658e-4047.09Aspartate carbamoyltransferase OS=Methanosarcina m... [more]
PYRB_METBF1.658e-4048.15Aspartate carbamoyltransferase OS=Methanosarcina b... [more]
PYRB_VIBS22.165e-4046.74Aspartate carbamoyltransferase catalytic chain OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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