FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_VIBC3 (Aspartate carbamoyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=pyrB PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.833e-39
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I   +  R  L  I + A ++    K  P  +++K  ++A+ F+EPSTRTRLSFE+A++R+GG V+  +N    S A KGETL D++R +  Y D  VMRH + GAAR A+  +  IPVINAGDG  QHP+Q LLD+Y+I    G+LD + V  VGDL  GRTV SLA  LAK+ + + YFV+P
Sbjct:   10 IISIAELSRAELELIVKTAGQL----KAQPNPELIKHKVVASCFFEPSTRTRLSFETAIQRIGGSVIGFDNGGNTSLAKKGETLADSVRVISSYVDAFVMRHPQEGAARLASEFSNGIPVINAGDGSNQHPSQTLLDLYSIFETQGRLDNLDVAFVGDLKYGRTVHSLAQALAKFDNNRFYFVAP 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_CELJU (Aspartate carbamoyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=pyrB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.833e-39
Identity = 85/188 (45.21%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGK----LDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++  QQF R+ +N IF+VA  ME        +++L+G ++  +F+EPSTRTR+SF +A   LGG V  T    E S   KGE+L DT R + GYSD+I MRH  +G+    A  + +PVIN GDGP +HPTQALLD+YTI +E+      +D +++ ++GDL +GRTV SL  LL  + +V I  VSP
Sbjct:    8 ILSIQQFQREDINRIFDVADAMEPYALRRRVTRVLEGAILGNMFFEPSTRTRVSFGAAFNLLGGNVRETTGF-ESSSLTKGESLFDTARVLSGYSDVICMRHPAAGSVAEFAEGSRVPVINGGDGPNEHPTQALLDLYTIRKELRSKGRGIDDLRIAMIGDLKHGRTVHSLCKLLGLFNNVSITLVSP 194          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYR1_SQUAC (CAD protein OS=Squalus acanthias GN=CAD PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.833e-39
Identity = 85/184 (46.20%), Postives = 123/184 (66.85%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++  ++F +D L+ +F VA  +    +      ILKG +MA++FYE STRT  SF +AM RLGG V+    A   S   KGE+L D+++T+  Y D++V+RH E GA   AA  +  P+INAGDG G+HPTQALLD++TI  E+G ++G+ + +VGDL +GRTV SLAYLL  Y+ V + +V+P
Sbjct: 1943 ILSVKRFTKDQLSHLFNVAHNLRLTVQKDRSLDILKGKVMASMFYEVSTRTSSSFRAAMHRLGGSVIHFSEAT--SSVQKGESLLDSVQTMSCYVDVVVLRHPEPGAVELAAKHSRKPIINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLAYLLTLYR-VNLRYVTP 2123          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_VIBCH (Aspartate carbamoyltransferase OS=Vibrio cholerae GN=pyrB PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 86/185 (46.49%), Postives = 120/185 (64.86%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I   +  R  L  I + A ++    K  P  +++K  ++A+ F+EPSTRTRLSFE+A++R+GG V+  +N    S A KGETL D++R +  Y D  VMRH + GAAR A+  +  +PVINAGDG  QHP+Q LLD+Y+I    G+LD + V  VGDL  GRTV SLA  LAK+ + + YFV+P
Sbjct:   10 IISIAELSRAELELIVKTAGQL----KAQPNPELIKHKVVASCFFEPSTRTRLSFETAIQRIGGSVIGFDNGGNTSLAKKGETLADSVRVISSYVDAFVMRHPQEGAARLASEFSNGVPVINAGDGSNQHPSQTLLDLYSIFETQGRLDNLDVAFVGDLKYGRTVHSLAQALAKFDNNRFYFVAP 190          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_STAMF (Aspartate carbamoyltransferase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 87/197 (44.16%), Postives = 122/197 (61.93%), Query Frame = 3
Query:   93 FQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVL--TTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK*R 677
            F   DV+    + R+ L  +F VA +MEK         +L GY++A  F EPSTRT  SF+SA  RLGG+ L  T+E A      AKGE   DTIR ++ YSD+IV+R    G AR AA  A  PVIN GDG  +HPTQA++D+YT+ +  G +DG+ +G++GDL   RT+ S  Y L +++  K+Y +SPG+++ R
Sbjct:    3 FPRGDVLSILDYSRENLEYLFLVADQMEKYLSEKKKLHLLDGYIVALAFLEPSTRTMYSFQSATYRLGGKTLVFTSETATSL---AKGENFADTIRMLDSYSDLIVIRSKYEGTARYAAELAENPVINGGDGRHEHPTQAMIDLYTMYKIFGGIDGLTIGILGDLKYARTITSFLYGLTRFKPRKVYLISPGILRLR 196          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_DICNV (Aspartate carbamoyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=pyrB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 83/192 (43.23%), Postives = 120/192 (62.50%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKL----DGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            ++    F R  L  +   A+ +E + +      +L G +MA LF+E STRTR+SF +A  RLGG V+ T     FS  +KGE+L DT R + GY+D+IVMRH + G+    A+   +PVINAGDG G+HP+QALLD YTI  E  +L    DG+ + +VGDL NGRT+ SLA LL+ + ++   F++P  ++
Sbjct:    8 ILSIDHFSRQDLEELLMTAKLLEPVAQRKVRCNVLDGSVMANLFFEASTRTRMSFHTAFARLGGSVVDTTGFT-FSSISKGESLSDTARVIAGYADVIVMRHPDQGSVAEFASKINVPVINAGDGIGEHPSQALLDYYTINNEFERLKKNIDGMTIAMVGDLKNGRTIHSLAKLLSLFDNIHFRFIAPETLR 198          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ALISL (Aspartate carbamoyltransferase OS=Aliivibrio salmonicida (strain LFI1238) GN=pyrB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.333e-39
Identity = 87/188 (46.28%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAV-IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            +I   +  R+ L  I E A  ++K     P   +LK  ++A+ F+E STRTRLSFE+A++RLGG V+  ++A   S A KGETL D+++ +  Y++  VMRH   GAAR A+  +   PVINAGDG  QHPTQ LLD+YTI    G+LD + +  VGDL  GRTV SL   LAK+  VK +F++P V+
Sbjct:   10 IISIPELSREELELIVETAGNIKK----EPQPDLLKNKVIASCFFEASTRTRLSFETAIQRLGGSVIGFDSAGNTSLAQKGETLADSVQIIASYANAYVMRHPREGAARLASEFSNGTPVINAGDGANQHPTQTLLDLYTIYETQGRLDNLNIAFVGDLKYGRTVHSLTQALAKFNGVKFFFIAPEVL 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PHOPR (Aspartate carbamoyltransferase OS=Photobacterium profundum GN=pyrB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 84/188 (44.68%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            +I   + +R  L  I E A     I K  P  ++LK  ++A+ F+EPSTRTRLSFE+A++RLGG V+  +N    S A KGETL D+++ +  Y D  VMRH + GAAR A+  +  +P+IN GDG  QHPTQ LLD+++I    G+LD + V  VGDL  GRTV SL   L+K+ ++  +FV+P ++
Sbjct:   10 IISIPELNRSELELIVETAG----ILKAEPNPELLKNKVVASCFFEPSTRTRLSFETAVQRLGGTVIGFDNGGNTSLAKKGETLADSVQVISSYVDAFVMRHPQEGAARLASEFSNGVPIINGGDGANQHPTQTLLDLFSIFETQGRLDNLNVAFVGDLKYGRTVHSLTQALSKFNNINFFFVAPEIL 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METMJ (Aspartate carbamoyltransferase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 93/184 (50.54%), Postives = 125/184 (67.93%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I  + F+R  L+ + + A+E +   K  PG  +L   L+A LF+EPSTRTR+SF +AM RLGG  ++ ++  E S   KGETL DTIR V GY+D IV+RH + GAAR A+  A +PVINAGDG GQHP+Q LLD+YTI R+   +DGI VGL+GDL  GRT  SLA  L+ Y  V ++ ++P
Sbjct:    4 IISIRDFERSDLDYLLDRAQEFDT-GKYRPG--MLDDKLVALLFFEPSTRTRMSFATAMARLGGRSISVDSV-EASSIVKGETLADTIRVVSGYADAIVLRHPKEGAARLASEFATVPVINAGDGAGQHPSQTLLDLYTI-RQSMPVDGIDVGLLGDLRYGRTAHSLALALSLY-GVTLHTIAP 181          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_CHRVO (Aspartate carbamoyltransferase OS=Chromobacterium violaceum GN=pyrB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 86/187 (45.99%), Postives = 120/187 (64.17%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            +I    F R+ L  + + A  +    K SP   +L+  L+A+ F+EPSTRTRLSFE+A++RLGG ++   +    S A KGETL D+I+ +  Y+D +VMRH + GAAR A+  + +PVIN GDG  QHPTQ LLD+++I    G+LDG+ V   GDL  GRTV SLA  L+ +   + YFVSP V+
Sbjct:    6 IISIPDFSREELELVVDTAARL----KQSPRGDLLQDKLVASCFFEPSTRTRLSFETAVQRLGGNIIGFADGGNTS-AKKGETLADSIKIISSYTDAVVMRHPKEGAARLASEFSAVPVINGGDGSNQHPTQTLLDLFSIRETQGRLDGLTVAFAGDLKYGRTVHSLAQALSLF-GARFYFVSPEVL 186          
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_VIBC31.833e-3947.03Aspartate carbamoyltransferase OS=Vibrio cholerae ... [more]
PYRB_CELJU1.833e-3945.21Aspartate carbamoyltransferase OS=Cellvibrio japon... [more]
PYR1_SQUAC1.833e-3946.20CAD protein OS=Squalus acanthias GN=CAD PE=2 SV=1[more]
PYRB_VIBCH2.394e-3946.49Aspartate carbamoyltransferase OS=Vibrio cholerae ... [more]
PYRB_STAMF2.394e-3944.16Aspartate carbamoyltransferase OS=Staphylothermus ... [more]
PYRB_DICNV2.394e-3943.23Aspartate carbamoyltransferase OS=Dichelobacter no... [more]
PYRB_ALISL5.333e-3946.28Aspartate carbamoyltransferase OS=Aliivibrio salmo... [more]
PYRB_PHOPR6.965e-3944.68Aspartate carbamoyltransferase OS=Photobacterium p... [more]
PYRB_METMJ6.965e-3950.54Aspartate carbamoyltransferase OS=Methanoculleus m... [more]
PYRB_CHRVO6.965e-3945.99Aspartate carbamoyltransferase OS=Chromobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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