FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALTI (Aspartate carbamoyltransferase catalytic chain OS=Salmonella typhi GN=pyrB PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALSV (Aspartate carbamoyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALPK (Aspartate carbamoyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALPC (Aspartate carbamoyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALPB (Aspartate carbamoyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=pyrB PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALPA (Aspartate carbamoyltransferase OS=Salmonella paratyphi A GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALNS (Aspartate carbamoyltransferase OS=Salmonella newport (strain SL254) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALHS (Aspartate carbamoyltransferase OS=Salmonella heidelberg (strain SL476) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALG2 (Aspartate carbamoyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALEP (Aspartate carbamoyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_SALTI1.552e-3845.41Aspartate carbamoyltransferase catalytic chain OS=... [more]
PYRB_SALSV1.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella schwa... [more]
PYRB_SALPK1.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella parat... [more]
PYRB_SALPC1.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella parat... [more]
PYRB_SALPB1.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella parat... [more]
PYRB_SALPA1.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella parat... [more]
PYRB_SALNS1.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella newpo... [more]
PYRB_SALHS1.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella heide... [more]
PYRB_SALG21.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella galli... [more]
PYRB_SALEP1.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella enter... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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