FC931143

Overview
NameFC931143
Unique NameFC931143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931143 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 53/173 (30.64%), Postives = 86/173 (49.71%), Query Frame = 1 
Query:  184 HKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD---KGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENE-AKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPV-KKLFDARPHVSAWAADITSRPAWAKVL 687
            +K   FL +NP G+VPVLE  +  +FES AI +Y++++  D    G+ L       A +  W +  +L+ D  ++ L W   + P  G     A  EE   + L + L+     L+ + +L   S TL D+  + N+NL   T + KK   A PHV  +   + ++P + KVL
Sbjct:   40 NKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLI----EYAHIEQWIDFSSLEID--ANMLKW---FAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVL 203
The following BLAST results are available for this feature:
BLAST of FC931143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EF1G2_ARATH1.780e-1130.64Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101H11EF PostHarvP1 Citrus clementina cDNA clone C34101H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931143 ID=FC931143; Name=FC931143; organism=Citrus clementina; type=EST; length=721bp
GGGGCACCTCTCACAAGTCAAGTCACAACTCACAATAACAAGCGAGGGAA
GGAAGACCCAAAGATGGCAGGCATCAAGGTCCACGGTTCTGTTTTCTCAA
CTGCTACGCAGCGAGTTTTCGCATCCCTCTACGAGAAGGAGCTCGAATAC
GAGCTTGTTCCCGTAGACATGAAGGCTGGTGAACACAAAAAGGAGGCCTT
CCTTTCTTTGAATCCATTCGGTCAAGTTCCGGTGCTTGAACACGGCGACC
AGAAGCTCTTCGAATCAAGGGCAATCACCCAATACATCGCCCAGGAGTTT
CCAGACAAAGGCACCCAGTTAACATGCCCAGGCAAGCCCATCGCCCCGTT
ATTGGTATGGAAGGAGGTGGAGGCACTCCAGTTCGACCCCCCATCATCGA
AGCTCAACTGGGAGCTCGTGTACAAGCCAATGTTTGGAATGACCACTGAT
CCAGCTGCGGTTGAAGAAAATGAAGCTAAGCTTGCCAAAATTTTAGATGT
TTACGAGGCCCGTTTGTCTCAGTCCAAATACTTGGCGTGCGACAGCTTCA
CCTTGGTCGATTTGCATCATCTCCCCAATATTAATTTGTTGTTGGGGACG
CCTGTCAAGAAGCTGTTTGATGCACGCCCCCATGTTAGCGCATGGGCAGC
TGATATCACTTCCAGACCGGCTTGGGCTAAGGTCCTTGCCTTGCTCAACA
CTGAACACTCTGCCCGCTACC
back to top