FC931147

Overview
NameFC931147
Unique NameFC931147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL1B_SCHPO (60S ribosomal protein L1-B OS=Schizosaccharomyces pombe GN=rpl1b PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.900e-60
Identity = 113/208 (54.33%), Postives = 153/208 (73.56%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+   ++R  +  I++ S+E  KRNFTET+ELQIGLKNYDPQ+D+RFSG++KLP++PRP M +C+LGDA  ++ A+  G+D M V+                  Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ ++VNFLVSLLKK WQN+  L +KS
Sbjct:    1 MSKVSVASVRSNVEQILKGSEE-KKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKS 207          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL1A_SCHPO (60S ribosomal protein L1-A OS=Schizosaccharomyces pombe GN=rpl1a PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.233e-60
Identity = 112/208 (53.85%), Postives = 154/208 (74.04%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+    +R ++ +I++ S+E  KRNFTET+ELQIGLKNYDPQ+D+RFSG++KLP++PRP M +C+LGDA  ++ A+  G+D M V+                  Y AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ +++NFLVSLLKK WQN+  L +KS
Sbjct:    1 MSKVSPANIRSSVETILKGSEE-KKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKS 207          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.528e-60
Identity = 108/209 (51.67%), Postives = 152/209 (72.73%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXX-YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+ SD +R  +S + + ++E+ KR F ET+ELQI LKNYD +KD+RFSG +K+  + +PK+ VC+  D QH +EA KIG ++MD+E                   Y AFLASES+++Q+P+LLGPGLNK GKFPTL+TH E + SK+N+ K+TVKFQLKKVLC+ VAVG++ + E+++  N+  S+NFLVSLLKK WQN++ LY+K+
Sbjct:    1 MSKISSDQVRSIVSQLFKEAQES-KRGFLETVELQINLKNYDTKKDKRFSGQIKIGTVTKPKLSVCVFADQQHCDEATKIGAEFMDIEALKKIGPKNKKAIKKLSKKYDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKT 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.319e-53
Identity = 107/208 (51.44%), Postives = 142/208 (68.27%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+    L EAI ++++  KE   R F E+I+LQ+ LKNYDPQKD+RFSGSV+LPH+ RP+M VC+L D  H + A+K  +  M+ E                  Y AFL SES+IK +PRL+GP +++ GKFPT+    ESL  KV E ++TVKFQLKKVLC+G  VG++ M E Q+ QNV M++NFLVSLLKKNWQN++  Y+KS
Sbjct:    1 MSKIPPALLSEAIQNVLKDRKE---RKFKESIDLQVNLKNYDPQKDKRFSGSVRLPHVCRPRMTVCLLCDLVHEDIAKKNDVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKS 205          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_PIG (60S ribosomal protein L10a (Fragment) OS=Sus scrofa GN=RPL10A PE=2 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 7.254e-44
Identity = 86/164 (52.44%), Postives = 113/164 (68.90%), Query Frame = 1
Query:   64 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM 555
            SK+  D L EA+  ++ +  + N   F ET+ELQI LKNYDPQKD+RFSG+V+L   PRPK  VC LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH   + +KV+E K+ VKFQ+K+VLC+
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRNXXKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCXLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNXDMVAKVDEVKSRVKFQMKEVLCL 165          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_ENTHI (60S ribosomal protein L10a (Fragment) OS=Entamoeba histolytica GN=RPL10A PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.761e-33
Identity = 73/163 (44.79%), Postives = 101/163 (61.96%), Query Frame = 1
Query:   88 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 576
            R+ +++I+   KE  +R F ET EL + LKNYDP KD+R  G+ KLP++ +   KVC+LGDAQ  E A+K  + +MDV+                  Y+ FL S+SV +Q+ ++LGPGLNK GKFP  +   E L+ K+NE +  V  QLKKVLCMGV  GN+
Sbjct:    6 RQGVATIL---KEKKERKFGETGELHLALKNYDPDKDKRCGGTDKLPNVTKANYKVCVLGDAQACEAAQKENIPHMDVDALKALYKDKMFFKKLARKYNTFLGSDSVGRQLQKILGPGLNKGGKFPPPLGKNEDLKVKINELQCQVNSQLKKVLCMGVGGGNV 165          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_CAERE (60S ribosomal protein L10a (Fragment) OS=Caenorhabditis remanei GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  208 SGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKK 543
            SGS++L HIPRP MKVC+ GD  H++EA    +  M  +                  Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KK
Sbjct:    1 SGSIRLKHIPRPSMKVCVFGDQHHLDEAAAGNIPAMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKK 112          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL1_PYRKO (50S ribosomal protein L1P OS=Pyrococcus kodakaraensis GN=rpl1p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 53/201 (26.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:   88 REAISSIVQYSKETNKRNFTETIELQIGLKNYDPQK-DRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            ++ + ++ +       RNFT+T+E+ + LK+ D +K + RF   V LPH    + K+ ++ D    E A+K+GLD +  E                  Y  F+A+  ++ +I R LG  L    K P +V     +LE  V + K TV+ QLK    +   +G   M+++++ +N    +N +++ L++    V+ +Y+K+
Sbjct:    6 QKLVEAVKEAKARAKPRNFTQTVEMAVNLKDVDLRKPENRFKLEVVLPHGRGKEPKIAVIADGAVAEAAKKLGLDVISGEELEELAKSPRQARKLAKKYDFFIAAAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNLEPIVEKLKKTVRIQLKNNPVVHAPIGTEDMDDEKLAENAEAVLNAIINKLERGENQVKSVYIKT 206          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL1_PYRAB (50S ribosomal protein L1P OS=Pyrococcus abyssi GN=rpl1p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 58/211 (27.49%), Postives = 103/211 (48.82%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MS++  D  R+ I   V+ +K   K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A ++GLD +                     Y  F+A   ++ +I R LG  L    K P +V     +LE  V + K TV+ QLK    +   VG   M +++I +N+   +N ++  L++    ++ +Y+K+
Sbjct:    1 MSRMPFD--RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGESQIKSVYVKT 209          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL1_PYRHO (50S ribosomal protein L1P OS=Pyrococcus horikoshii GN=rpl1p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 58/211 (27.49%), Postives = 103/211 (48.82%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNK-RNFTETIELQIGLKNYDPQK-DRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV-THQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MS++  D  R+ I   V+ +K   K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A ++GLD +                     Y  F+A   ++ +I R LG  L    K P +V     ++E  V + K TV+ QLK    +   VG   M ++Q+ +N+   +N ++  L++    +R +Y+K+
Sbjct:    1 MSRMAFD--RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAKSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNIEPIVEKLKKTVRIQLKDNPVVHAPVGTEKMSDEQLAENIEAVLNAIIGKLERGENQIRSVYVKT 209          
The following BLAST results are available for this feature:
BLAST of FC931147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL1B_SCHPO1.900e-6054.3360S ribosomal protein L1-B OS=Schizosaccharomyces ... [more]
RL1A_SCHPO4.233e-6053.8560S ribosomal protein L1-A OS=Schizosaccharomyces ... [more]
RL10A_DICDI5.528e-6051.6760S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL10A_TRYBR1.319e-5351.4460S ribosomal protein L10a OS=Trypanosoma brucei r... [more]
RL10A_PIG7.254e-4452.4460S ribosomal protein L10a (Fragment) OS=Sus scrof... [more]
RL10A_ENTHI5.761e-3344.7960S ribosomal protein L10a (Fragment) OS=Entamoeba... [more]
RL10A_CAERE5.580e-2854.4660S ribosomal protein L10a (Fragment) OS=Caenorhab... [more]
RL1_PYRKO7.559e-1726.3750S ribosomal protein L1P OS=Pyrococcus kodakaraen... [more]
RL1_PYRAB8.357e-1627.4950S ribosomal protein L1P OS=Pyrococcus abyssi GN=... [more]
RL1_PYRHO1.091e-1527.4950S ribosomal protein L1P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionC34102A03EF PostHarvP1 Citrus clementina cDNA clone C34102A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931147 ID=FC931147; Name=FC931147; organism=Citrus clementina; type=EST; length=685bp
AGGGTTTCTTTTTCGTCTTCGACGAAAAAAAATCTGTAAAGGACTCCAAG
CGCTTCAATCATGAGCAAGCTTCAGAGTGATGCACTGAGAGAGGCCATCT
CTAGTATTGTGCAATACTCTAAGGAGACAAATAAGAGGAACTTCACCGAG
ACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAGGACAG
GCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAAGATGA
AGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGAAGATT
GGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAGAACAA
GAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCATCAG
AGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCAACAAG
GCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAGTCCAA
AGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGTGCTTT
GCATGGGAGTTGCTGTCGGAAACCTTTCAATGGAGGAGAAGCAGATCTTC
CAGAATGTTNCAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAAAAA
CTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTA
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