FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH103_RHIME (10 kDa chaperonin 3 OS=Rhizobium meliloti GN=groS3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 37/93 (39.78%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            + +PL DRV+++      ++ GGI +P TA+ KPQ GEV+AVG G      KL  + VK G  +++ K++GTE++ +G + LI++E D++GI+
Sbjct:    2 TFRPLLDRVVIRRAEGNTQSKGGIIIPDTAKEKPQEGEVIAVGPGSRDESGKLIPLDVKIGDTILFGKWSGTEVKIDGEDLLIMKESDIMGIV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_WOLWR (10 kDa chaperonin OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E N    ++++E D++ +++
Sbjct:    5 SLNVLDDSVL--IKPISEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERVTLTVKAGDKVFYRQWAGTEIEHNDEKLIVMKESDILAVIK 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BORA1 (10 kDa chaperonin OS=Bordetella avium (strain 197N) GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK     K L + +K G +V++ KYAG  ++ +G   L++RE++++ +++
Sbjct:    2 ALRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVLAVGPGKKTEDGKILPVDLKVGDKVLFGKYAGQGVKVDGEELLVIREEEILAVIQ 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_DIAST (10 kDa chaperonin OS=Diaphorobacter sp. (strain TPSY) GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DRV+VK    E  T  GI +P  A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++ NG   L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGEVLAVGPGKKNDKGELIALNVKVGDRVLFGKYSGQTVKVNGDELLVMKEDDLFAVVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BURVI (10 kDa chaperonin OS=Burkholderia vietnamiensis GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K  L  + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDQETKTASGIVIPDAAAEKPDQGEVLAIGPGKRDDKGALIALDVKVGDRVLFGKYAGQTVKVDGQELLVMREEDIMAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BURP8 (10 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDQETKTASGIVIPDAAAEKPDQGEVLAVGPGKRDDKGAPIALDVKVGDRVLFGKYAGQTVKVDGNELLVMREEDIMAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BURCE (10 kDa chaperonin OS=Burkholderia cepacia GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDQETKTASGIVIPDAAAEKPDQGEVLAIGPGKRDDKGAPIALDVKVGDRVLFGKYAGQTVKVDGQELLVMREEDIMAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_AMOPS (10 kDa chaperonin OS=Amoeba proteus symbiotic bacterium GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            I+PL DRV+V+    E  T G I +P +A  KP  GE++A+G GK +    +    VK G  V++ KY+GTE++  G   +++REDD++G++E
Sbjct:    3 IRPLHDRVVVRRLEEERTTAGWIVIPDSATEKPMRGEIIAIGAGKILDNGDVRAFVVKVGDVVLFGKYSGTEVKVAGQELVVMREDDIMGVIE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ACISJ (10 kDa chaperonin OS=Acidovorax sp. (strain JS42) GN=groS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DRV+VK    E  T  GI +P  A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++ NG   L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGEVLAVGPGKKNDKGELIALNVKVGDRVLFGKYSGQTVKVNGDELLVMKEDDLFAVVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH101_RHILO (10 kDa chaperonin 1 OS=Rhizobium loti GN=groS1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 34/92 (36.96%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  293 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +PL DRV+++    + K+ GGI +P  A+ KPQ GEV+AVG G +      + + VK G  +++ K++GTE++ +G + LI++E D++G+++
Sbjct:    4 RPLHDRVVIRRAEGDTKSKGGIIIPDNAKEKPQEGEVIAVGPGARDENGALVPLDVKAGDLILFGKWSGTEVKIDGEDLLIMKEADIMGVID 95          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH103_RHIME1.818e-1339.7810 kDa chaperonin 3 OS=Rhizobium meliloti GN=groS3... [more]
CH10_WOLWR2.375e-1339.3610 kDa chaperonin OS=Wolbachia sp. subsp. Drosophi... [more]
CH10_BORA12.375e-1339.3610 kDa chaperonin OS=Bordetella avium (strain 197N... [more]
CH10_DIAST3.102e-1341.4910 kDa chaperonin OS=Diaphorobacter sp. (strain TP... [more]
CH10_BURVI3.102e-1340.8610 kDa chaperonin OS=Burkholderia vietnamiensis GN... [more]
CH10_BURP83.102e-1340.8610 kDa chaperonin OS=Burkholderia phymatum (strain... [more]
CH10_BURCE3.102e-1339.7810 kDa chaperonin OS=Burkholderia cepacia GN=groS ... [more]
CH10_AMOPS3.102e-1339.7810 kDa chaperonin OS=Amoeba proteus symbiotic bact... [more]
CH10_ACISJ3.102e-1341.4910 kDa chaperonin OS=Acidovorax sp. (strain JS42) ... [more]
CH101_RHILO3.102e-1336.9610 kDa chaperonin 1 OS=Rhizobium loti GN=groS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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