FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_TREPA (10 kDa chaperonin OS=Treponema pallidum GN=groS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            I PL DRVLVK    E KT  GI +P TAQ K Q+G V+AVG        K+ +SV  G +V++ KYAG  ++ +G  HL+L+  D++ ++E
Sbjct:    3 IIPLADRVLVKTDKSETKTASGIIIPDTAQEKMQSGTVIAVGS----DSEKIKVSV--GQRVMHDKYAGNPVKIDGEEHLLLKGADILAVIE 88          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_POLSJ (10 kDa chaperonin OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=groS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLD-ISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK   K  L  ++VK G +V++ KY+G  ++ +G   L+++E+D+  ++E
Sbjct:    3 LRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGDLSPMAVKIGDRVLFGKYSGQTVKVDGDELLVMKEEDLFAVVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_FINM2 (10 kDa chaperonin OS=Finegoldia magna (strain ATCC 29328) GN=groS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 38/94 (40.43%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  287 SIKPLGDR-VLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++KP+GDR VL K +  EEKT  GI LPS+A+  P   EV+A+G  +     K+  ++K G +VIYSKYAGTE++    ++++++ +D++ ++E
Sbjct:    2 NLKPIGDRLVLKKQEKEEEKTFSGIVLPSSAKEAPVYAEVLAIGS-EVEEDEKMKGNIKVGDKVIYSKYAGTEIKLEDTDYILVKYEDILAVVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_TREPR (10 kDa chaperonin OS=Tremblaya princeps GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/95 (37.89%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            + I+PLGDRV+VK    E KT  GI +P +A  K   G VVA+G GK   +  ++ + V+ G +V++ KYAG  ++ +  + +++RE+D+V ++E
Sbjct:    2 SKIRPLGDRVVVKRSEDETKTPCGIVIPDSAAEKQDQGTVVALGPGKKDSEGARVPMEVRLGDRVLFGKYAGQSIKVDDEDLMVMREEDIVAVIE 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_FERNB (10 kDa chaperonin OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KPLG+R+L+K    E+KT GGI LP  A+ KP   E+V       VGK   D  +K G +VIY+KY+GTE++ +  +++I+   D++  +E
Sbjct:    3 VKPLGERLLIKPIIEEKKTAGGIVLPDAAKEKPMKAEIV------EVGKLPEDCQLKVGDKVIYNKYSGTEIKIDDEDYIIIDVSDILAKIE 88          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_HAEPS (10 kDa chaperonin OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=groS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            I+PL D+V++K + +E K+ GGI L  +A TK   G V+AVG G+T+   T L ++VK G  VI+++Y   E + +G   LIL ED+++ I+E
Sbjct:    3 IRPLHDKVILKREEIETKSAGGIVLTGSAATKSTRGTVIAVGNGRTLDNGTVLPLNVKVGDVVIFNEYGVKEEKIDGETVLILSEDNILAIVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CHLFF (10 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            IKPLGDR+LVK +  +  + GGI LP TA+ K    EV+A+G GK     + L   VK G  V+  KYAG EL   G  ++I++E +V+ +L
Sbjct:   10 IKPLGDRILVKREEEDTTSHGGIILPDTAKKKQDRAEVLALGTGKRDKDGQILPFEVKVGDIVLIDKYAGQELTIEGEEYVIVQESEVMAVL 101          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_THEM4 (10 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 36/92 (39.13%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++PLG R+L+K    E++T+GGI LP TA+ KP   EVVAVG          D+ +  G +VI+SKY+GTE++    +++I+  +D++  +E
Sbjct:    3 VRPLGARLLIKPIQEEKRTEGGIVLPDTAKEKPMKAEVVAVG-----NLEDSDVDIVVGDKVIFSKYSGTEIKIEDDDYIIIDVEDILAKIE 89          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAES (10 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 34/93 (36.56%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G ++AVG+G+ +   T++   V  G  +++ +YAGTE++     +LIL E+D++ I+E
Sbjct:    2 LKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGDKTYLILNEEDILAIIE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_STAEQ (10 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 34/93 (36.56%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G ++AVG+G+ +   T++   V  G  +++ +YAGTE++     +LIL E+D++ I+E
Sbjct:    2 LKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGDKTYLILNEEDILAIIE 94          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_TREPA1.179e-1243.4810 kDa chaperonin OS=Treponema pallidum GN=groS PE... [more]
CH10_POLSJ1.179e-1240.8610 kDa chaperonin OS=Polaromonas sp. (strain JS666... [more]
CH10_FINM21.179e-1240.4310 kDa chaperonin OS=Finegoldia magna (strain ATCC... [more]
CH10_TREPR1.539e-1237.8910 kDa chaperonin OS=Tremblaya princeps GN=groS PE... [more]
CH10_FERNB1.539e-1240.2210 kDa chaperonin OS=Fervidobacterium nodosum (str... [more]
CH10_HAEPS2.010e-1241.9410 kDa chaperonin OS=Haemophilus parasuis serovar ... [more]
CH10_CHLFF2.010e-1243.4810 kDa chaperonin OS=Chlamydophila felis (strain F... [more]
CH10_THEM42.626e-1239.1310 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH10_STAES3.429e-1236.5610 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH10_STAEQ3.429e-1236.5610 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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