FC931239

Overview
NameFC931239
Unique NameFC931239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 6.831e-83
Identity = 151/222 (68.02%), Postives = 177/222 (79.73%), Query Frame = 1
Query:   13 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPNLR 678
            M+  VSAIGFEG+EKRLE+SFFEP  FADP G+GLR LSK+QLDE L PAECTIV+SLSNE++DSYVLSESSLFVY YK+IIKTCGTTKLL SIP I          VRSVRYTRG FIF GAQ +PHRSFSEEV+VLD +FGK G  S A++MG  D  ++WHVYSA A +   ++PVYT+EMCMT L+R +ASVFYKTN SSA  +T++SG+R ILPN R
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHVDSYVLSESSLFVYAYKIIIKTCGTTKLLKSIPPILKLADSLSLTVRSVRYTRGCFIFPGAQSYPHRSFSEEVSVLDNYFGKLGSGSKAYIMGGSDKQQKWHVYSACAASTRTLDPVYTMEMCMTSLNRDKASVFYKTNSSSATSVTDNSGLRDILPNSR 222          

HSP 2 Score: 25.0238 bits (53), Expect = 6.831e-83
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3
Query:  672 SEICDFEFDP 701
            S ICDFEFDP
Sbjct:  221 SRICDFEFDP 230          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.411e-82
Identity = 153/218 (70.18%), Postives = 179/218 (82.11%), Query Frame = 1
Query:   19 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPN 672
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK  LDEIL PAECTIV SL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLL SIP I          V+SVRYTRGSFIF GAQ FPHRSFSEEVAVLD +F K G  S A VMGSP   ++WHVYSA+AE  ++ +PVYTLEMCMTGLD+++ASVF+K+  +SAA+MTE SGIRKILP+
Sbjct:   16 MTISAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAHLDEILGPAECTIVDSLANESVDSYVLSESSLFVYSYKIIIKTCGTTKLLNSIPPILRLAETLFLDVKSVRYTRGSFIFPGAQSFPHRSFSEEVAVLDNYFAKLGAGSKAIVMGSPGKPQKWHVYSATAET-NYDDPVYTLEMCMTGLDKEKASVFFKSQSASAAVMTESSGIRKILPD 232          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.105e-82
Identity = 152/221 (68.78%), Postives = 177/221 (80.09%), Query Frame = 1
Query:   19 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEA----GSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            + VSAIGFEGYEKRLEVSFFEP +F D  G+GLR+L K Q+DEIL PAECTIVSSLSN+ LDSYVLSESSLF++PYK+IIKTCGTTKLL SI  +          V+SVRYTRGSF+  G QPFPHR+FSEEV+VLDGHF K G+ S A++MG  D TK+WHVYSASA A    G++ N VYTLEMCMTGLD+++ASVFYK   SSA  MT++SGIRKILP
Sbjct:    1 MSVSAIGFEGYEKRLEVSFFEPSLFVDTHGKGLRALPKSQIDEILAPAECTIVSSLSNDELDSYVLSESSLFIFPYKIIIKTCGTTKLLPSIEPLLRLAGELSLEVKSVRYTRGSFLCPGGQPFPHRNFSEEVSVLDGHFAKMGLSSVAYLMGDDDETKKWHVYSASAPARNGNGNNNNNVYTLEMCMTGLDKEKASVFYKNESSSAGSMTDNSGIRKILP 221          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.146e-82
Identity = 155/217 (71.43%), Postives = 175/217 (80.65%), Query Frame = 1
Query:   28 SAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN---PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            SAIGFEG+EKRLE+SFF PG   DP  RGLRSL+K+QLD+ L PAECTIVSSLSN+ LDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP I          V+SVRYTRGSFIF GAQ FPHRSF+EEV VLD HFGK GM S A+VMG  +  ++WHVYSASAE+ + V    PVYTLEM MTGL ++ ASVF+K+  SSAA+MTEDSGIRKILP
Sbjct:    3 SAIGFEGFEKRLEISFFNPGPSVDPVARGLRSLTKNQLDKFLAPAECTIVSSLSNDLLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPHILELSGELSLTVQSVRYTRGSFIFPGAQTFPHRSFTEEVMVLDSHFGKLGMCSNAYVMGGAEKDQKWHVYSASAESANLVTQTAPVYTLEMSMTGLSKRNASVFFKSESSSAAVMTEDSGIRKILP 219          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.194e-81
Identity = 154/218 (70.64%), Postives = 179/218 (82.11%), Query Frame = 1
Query:   19 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPN 672
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK QLDEIL PAECTIV SL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLL SI  I          V+SVRYTRGSFIF GAQ +PHRSFSEEVAVLD +FG  G  S AFVMGSP   ++WHVYSA+AE  S+ +PVYTLEMCMTGLD+ +ASVF+K+  +SAA+MTE SGIRKILP+
Sbjct:   25 MALSAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAQLDEILGPAECTIVDSLANESVDSYVLSESSLFVYSYKIIIKTCGTTKLLHSILPILTLADGLCLDVKSVRYTRGSFIFPGAQSYPHRSFSEEVAVLDKYFGNLGTGSKAFVMGSPAKPQKWHVYSATAEP-SYDDPVYTLEMCMTGLDKGKASVFFKSESASAAVMTETSGIRKILPD 241          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 2.162e-81
Identity = 152/218 (69.72%), Postives = 174/218 (79.82%), Query Frame = 1
Query:   19 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPN 672
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLLLSIP I          VRSVRYTRGSFIF GAQ FPHR FSEEVAVLDG FGK G  S A+++G  D  + WH+Y AS+++ S    VYTLEMCMTGLDR++ASVF+K    SAA MT +SGIRKIL N
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKLIIKTCGTTKLLLSIPPILKLADSISLNVRSVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGFFGKLGSGSMAYILGGSDEAQNWHIYCASSDSVSPEGSVYTLEMCMTGLDREKASVFFKEQTGSAAEMTVNSGIRKILRN 218          

HSP 2 Score: 24.2534 bits (51), Expect = 2.162e-81
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  672 SEICDFEFDP 701
            SEICDF+F+P
Sbjct:  219 SEICDFDFEP 228          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.064e-80
Identity = 148/218 (67.89%), Postives = 174/218 (79.82%), Query Frame = 1
Query:   19 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPN 672
            + +SAIGFEG+EKRLE++FFEP +F DP G+GLR+L K QLDEIL PAECTIV SL+NE +DSYVLSESSLF+Y YK+IIKTCGTTKLL +IP I          V+SVRYTRGSFIF GAQ + HRSFSEEVAVLDG+FGK    S AFVMG P   ++WHVYSASAE  S   PVYTLEMCMTGL +++ASVF+K+   +AA+MTE SGIRKILP+
Sbjct:    1 MAISAIGFEGFEKRLEITFFEPSIFVDPEGKGLRALCKAQLDEILGPAECTIVDSLANESVDSYVLSESSLFIYAYKIIIKTCGTTKLLRAIPPILRLAGKLSLDVKSVRYTRGSFIFPGAQSYAHRSFSEEVAVLDGYFGKLAAGSKAFVMGDPAKPQKWHVYSASAETISFEEPVYTLEMCMTGLKKEKASVFFKSQSPNAAVMTESSGIRKILPD 218          

HSP 2 Score: 22.7126 bits (47), Expect = 1.064e-80
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  672 SEICDFEFDP 701
            S+ICDF+F+P
Sbjct:  219 SKICDFDFEP 228          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.253e-80
Identity = 148/218 (67.89%), Postives = 175/218 (80.28%), Query Frame = 1
Query:   19 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHV-NPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            + +SAIGFEGYEKRLEV+FFEP +F D  G GLR+L+K QLDEIL PA CTIVSSLSN+ LDSYVLSESS FVYPYKVIIKTCGTTKLLLSIP +          V+SV+YTRGSF+  G QPFPHRSFSEEV+VLDGHF + G++S A++MG+ D TK+WHVY+ASA+  S+  N VYTLEMCMTGLDR++A+VFYK        MT++SGIRKILP
Sbjct:    1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQLDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPGGQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYTLEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILP 218          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM3_BRAJU (S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.596e-78
Identity = 149/220 (67.73%), Postives = 175/220 (79.55%), Query Frame = 1
Query:   19 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHV-NPVYTLEMCMTGLDRKRASVFYKTNESSA--AMMTEDSGIRKILP 669
            + +SAIGFEGYEKRLEVSFFEP  F D  G GLR+L++ QLDEIL PA C IVSSLSN++LDSYVLSESS FVYPYKVIIKTCGTTKLLLSIP +          V+SV+YTRGSF+  G QPFPHRSFSEEV+VLDGHF K G++S A++MG+ D  K+WHVY+ASA+  S   N VYTLEMCMTGLD+++ASVFYK NE+      MT++SGIRKILP
Sbjct:    1 MALSAIGFEGYEKRLEVSFFEPSFFQDSKGLGLRALTRSQLDEILTPAACEIVSSLSNDHLDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPGGQPFPHRSFSEEVSVLDGHFTKLGLNSVAYLMGNDDENKKWHVYAASAQTSSDCNNNVYTLEMCMTGLDKEKASVFYK-NETGGENGSMTDNSGIRKILP 219          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM1_BRAJU (S-adenosylmethionine decarboxylase proenzyme 1 OS=Brassica juncea GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.785e-77
Identity = 145/219 (66.21%), Postives = 172/219 (78.54%), Query Frame = 1
Query:   19 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEA--GSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            + +SAIGFEG  +RLEVSFFEP +F D  G+GLR+LSK Q+DEIL PAECTIVSSLSN+ LDSYVLSESSLF++PYK+IIKTCGTTKLLLSI  +          V+SVRYTRGSF+  G QPFP R+ SEEV+VLDGHF K G+ S A++MG  D TK+WHVYSASA A   +  N VYTLEMCM+GLD+ +ASVF+K   SSA  MT++SGIRKILP
Sbjct:    1 MSLSAIGFEGLRERLEVSFFEPSLFLDTHGKGLRALSKSQIDEILAPAECTIVSSLSNDELDSYVLSESSLFIFPYKIIIKTCGTTKLLLSIEPLLRLAGGVSLEVKSVRYTRGSFLCPGGQPFPQRNLSEEVSVLDGHFAKMGLSSVAYLMGDDDETKKWHVYSASAPAKNSNGDNNVYTLEMCMSGLDKDKASVFFKNESSSAGSMTDNSGIRKILP 219          
The following BLAST results are available for this feature:
BLAST of FC931239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_DAUCA6.831e-8368.02S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM2_DIACA1.411e-8270.18S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_BRAJU4.105e-8268.78S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_HELAN9.146e-8271.43S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM1_DIACA1.194e-8170.64S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_PEA2.162e-8169.72S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM_SPIOL1.064e-8067.89S-adenosylmethionine decarboxylase proenzyme OS=Sp... [more]
DCAM1_ARATH2.253e-8067.89S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM3_BRAJU3.596e-7867.73S-adenosylmethionine decarboxylase proenzyme 3 OS=... [more]
DCAM1_BRAJU1.785e-7766.21S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34103A06EF PostHarvP1 Citrus clementina cDNA clone C34103A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931239 ID=FC931239; Name=FC931239; organism=Citrus clementina; type=EST; length=701bp
CTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGTTA
TGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATC
CTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAATA
CTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAATATCT
TGATTCATATGTCCTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAG
TTATTATCAAAACTTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCC
ATCCTCAAGTTATCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATA
CACTCGCGGAAGCTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTA
GCTTCTCTGAGGAAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGT
ATGGACAGCACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATG
GCATGTTTACTCTGCTTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTT
ACACTCTAGAGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTC
TTCTACAAAACTAATGAAAGCTCAGCGGCTATGATGACCGAGGACTCTGG
CATCAGAAAGATTCTTCCAAATCTGAGATTTGTGATTTTGAGTTTGACCC
T
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