FC931239

Overview
NameFC931239
Unique NameFC931239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 7.986e-63
Identity = 126/226 (55.75%), Postives = 159/226 (70.35%), Query Frame = 1
Query:   13 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNT-KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNE----SSAAMMTEDSGIRKILPNL 675
            MA PVSAIGFEGYEKRLE++F E  +FADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+Y  K++IKTCGTT LLL+IP I          + +V+Y+RG FIF GAQP PHRSFSEEV VL+ +FG       A+V+G P    ++WH+Y A+ +      P+ TLEMCMTGLD+ +ASVF+KT+     S A  MT+ SGI  I+P +
Sbjct:    1 MAAPVSAIGFEGYEKRLEITFSEASIFADPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSQKIVIKTCGTTMLLLTIPRILELAEELCMPLAAVKYSRGMFIFPGAQPAPHRSFSEEVDVLNRYFGHLNSGGNAYVIGDPAKPGQKWHIYYATEQP---EQPMVTLEMCMTGLDKTKASVFFKTHADGHVSCAKEMTKLSGISDIIPEM 223          

HSP 2 Score: 22.3274 bits (46), Expect = 7.986e-63
Identity = 6/9 (66.67%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  675 EICDFEFDP 701
            E+CDF+F+P
Sbjct:  224 EVCDFDFEP 232          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.358e-62
Identity = 126/225 (56.00%), Postives = 159/225 (70.67%), Query Frame = 1
Query:   16 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNT-KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKT----NESSAAMMTEDSGIRKILPNL 675
            A PVSAIGFEGYEKRLE++F E  VF DP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+YP K++IKTCGTTKLLL+IP I          + +V+Y+RG+FIF GAQP PHRSFSEEVA L+ +FG       A+V+G P    ++WHV+ A+        P+  LEMCMTGLD+K+A VF+KT    N + A  MT+ SGI +I+P +
Sbjct:    9 ASPVSAIGFEGYEKRLEITFSEAPVFVDPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYPLKIVIKTCGTTKLLLTIPRILELAEELSMPLAAVKYSRGTFIFPGAQPAPHRSFSEEVAALNRYFGGLKSGGNAYVIGDPARPGQKWHVFYATEYP---EQPMVNLEMCMTGLDKKKACVFFKTNADGNTTCAKEMTKLSGISEIIPEM 230          

HSP 2 Score: 22.7126 bits (47), Expect = 1.358e-62
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  675 EICDFEFDP 701
            EICDF+F+P
Sbjct:  231 EICDFDFEP 239          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.010e-62
Identity = 126/223 (56.50%), Postives = 158/223 (70.85%), Query Frame = 1
Query:   22 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNT-KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKT----NESSAAMMTEDSGIRKILPNL 675
            PVSAIGFEGYEKRLE++F E  VFADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+Y  K++IKTCGTTKLLL+IP I          + +V+Y+RG FIF  AQP PHRSFSEEVAVL+ +FG       A+V+G P    ++WH+Y A+        P+ TLEMCMTGLD+++ASVF+KT    + S A  MT+ SGI  I+P +
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHP---EQPMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEM 230          

HSP 2 Score: 22.7126 bits (47), Expect = 3.010e-62
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  675 EICDFEFDP 701
            EICDF+F+P
Sbjct:  231 EICDFDFEP 239          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.010e-62
Identity = 126/223 (56.50%), Postives = 158/223 (70.85%), Query Frame = 1
Query:   22 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNT-KRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKT----NESSAAMMTEDSGIRKILPNL 675
            PVSAIGFEGYEKRLE++F E  VFADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVLSESSLF+Y  K++IKTCGTTKLLL+IP I          + +V+Y+RG FIF  AQP PHRSFSEEVAVL+ +FG       A+V+G P    ++WH+Y A+        P+ TLEMCMTGLD+++ASVF+KT    + S A  MT+ SGI  I+P +
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSAQPAPHRSFSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHP---EQPMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEM 230          

HSP 2 Score: 22.7126 bits (47), Expect = 3.010e-62
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  675 EICDFEFDP 701
            EICDF+F+P
Sbjct:  231 EICDFDFEP 239          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_DICDI (S-adenosylmethionine decarboxylase proenzyme OS=Dictyostelium discoideum GN=amd1 PE=3 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.458e-28
Identity = 83/218 (38.07%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   37 GFEGYEKRLEVSFFE------PGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPV-YTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            GFEG EK+L++ F          +   P   GLR++ K +   +L  A CTI+S  SN+++DSYVLSESSLFVYP + +IKTCGTT LL  I  +          V  V ++R +      Q FPH SFS+EV  L+  F     D  A+VMG   N   W++Y A       +     T E+ M  LD      F+K    SA   T +SGI  +LP
Sbjct:   28 GFEGPEKKLDIRFGPISKGSVKSIAGSPSKVGLRTIDKEKWQTVLDSARCTIISQTSNDHMDSYVLSESSLFVYPRRAMIKTCGTTTLLHLIAKMVQVGKECGLEVEMVVFSRKNLNQPSKQVFPHCSFSDEVNFLNKIF-----DGQAYVMGDV-NKDHWNLYIADFRKNPTLQRTEQTFEVMMHDLDETVMKQFFKREGVSAWDTTVNSGIADLLP 239          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_CAEEL (S-adenosylmethionine decarboxylase proenzyme OS=Caenorhabditis elegans GN=smd-1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 80/214 (37.38%), Postives = 113/214 (52.80%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYS--ASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            FEG EK LE+ F           R LR + + ++D +L  A C I+ S  NE +DSYVLSESSLF+   +VI+KTCGTT+LL ++P I            V+SV Y+R +F+    QP  H++F  EV  LD  F    +D  A+ +GS     RW++Y+     E  +H  P +TLE+ M+ LD +    F K            +GI KI+P
Sbjct:   25 FEGAEKLLELWFCSS---TQNETRSLRIIPREEIDAMLDIARCKILHSKHNESIDSYVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQSVYYSRKNFLRPDLQPSLHKNFDAEVEYLDSFF----VDGHAYCLGSL-KQDRWYLYTFHREVEFPAHKQPDHTLEILMSDLDEEVLHKFTKDYAVDGNDCFMRAGIDKIIP 230          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_ONCVO (S-adenosylmethionine decarboxylase proenzyme OS=Onchocerca volvulus GN=smd-1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 78/212 (36.79%), Postives = 107/212 (50.47%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            FEG EK LE+ F +       G   LR++   +L  +L  A+C I+ S SNE +DSYVLSESS+F+  +++I+KTCGTT+LL +I  I            V SV Y+R +F+    QP+PH SF  EV  L+ HF       +A+ +G P    RW +Y+          P +TLE+ M GL     S F              S I  ILP
Sbjct:   30 FEGAEKLLEIWFDKN----QNGATSLRNIPYSELVSMLDIAQCRILHSKSNECMDSYVLSESSMFISDFRIILKTCGTTRLLHAIERILHIAKIYCNMDNVVSVFYSRKNFMHPEKQPYPHSSFETEVDYLEEHFA----GGSAYCIG-PQRQDRWFLYTMVTPQAVFPFPEHTLEILMNGLPEDVLSTFSPNVSKDGKDCRMKSAINTILP 232          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_RAT (S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus GN=Amd1 PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 73/213 (34.27%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+        +N P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDLPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP 214          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 73/213 (34.27%), Postives = 114/213 (53.52%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            FEG EK LEV F      A  G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+        +N P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP 214          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_BOVIN (S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus GN=AMD1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 73/213 (34.27%), Postives = 115/213 (53.99%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAI--XXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN-PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILP 669
            FEG EK LEV F      A+ G   LR++ + + D +LK  +C+I+S    +  ++YVLSESS+FV   + I+KTCGTT LL ++  +            ++S  Y+R +F+    Q +PHR+F EE+  L+  F     +  A+ MG   N+  W++Y+        +N P  TLE+ M+ LD      FY  +  +A  +T +SGIR ++P
Sbjct:    7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIF----PNGAAYCMGRM-NSDCWYLYTLDFPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP 214          
The following BLAST results are available for this feature:
BLAST of FC931239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_HORCH7.986e-6355.75S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_MAIZE1.358e-6256.00S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_ORYSJ3.010e-6256.50S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI3.010e-6256.50S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_DICDI4.458e-2838.07S-adenosylmethionine decarboxylase proenzyme OS=Di... [more]
DCAM_CAEEL9.295e-2637.38S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_ONCVO1.586e-2536.79S-adenosylmethionine decarboxylase proenzyme OS=On... [more]
DCAM_RAT1.028e-2434.27S-adenosylmethionine decarboxylase proenzyme OS=Ra... [more]
DCAM_MESAU1.342e-2434.27S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]
DCAM_BOVIN1.342e-2434.27S-adenosylmethionine decarboxylase proenzyme OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionC34103A06EF PostHarvP1 Citrus clementina cDNA clone C34103A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931239 ID=FC931239; Name=FC931239; organism=Citrus clementina; type=EST; length=701bp
CTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGTTA
TGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATC
CTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAATA
CTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAATATCT
TGATTCATATGTCCTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAG
TTATTATCAAAACTTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCC
ATCCTCAAGTTATCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATA
CACTCGCGGAAGCTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTA
GCTTCTCTGAGGAAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGT
ATGGACAGCACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATG
GCATGTTTACTCTGCTTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTT
ACACTCTAGAGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTC
TTCTACAAAACTAATGAAAGCTCAGCGGCTATGATGACCGAGGACTCTGG
CATCAGAAAGATTCTTCCAAATCTGAGATTTGTGATTTTGAGTTTGACCC
T
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