FC931239

Overview
NameFC931239
Unique NameFC931239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_TRYCR (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 69/214 (32.24%), Postives = 94/214 (43.93%), Query Frame = 1
Query:   22 PVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRW-HVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRK 660
            P     FEG EKRLEV      +  +    GL +L       ++      IVS  SNEY+ SYVL+ESSLFV   ++I+ TCGTT LL ++P +          V  V +   ++ F   Q  PH S +EE   L  +F         F+ G  D+   +  VY          N    L M M GLDR +   ++     S    TE + IRK
Sbjct:   22 PNQGASFEGPEKRLEVIM---RIIDETHSEGLHALGDEVWKGVVGSLNAQIVSKESNEYIRSYVLTESSLFVMRDRIILITCGTTTLLNAVPFVLDAVSDVRGEVEWVSFMHKNYSFPWEQKGPHLSMAEEFNTLRTYF----PSGKPFIFGPVDSDHYFLFVYDDVIRPCETENDT-QLSMTMYGLDRTQTKHWFSDRFISTG--TETAAIRK 225          
BLAST of FC931239 vs. ExPASy Swiss-Prot
Match: DCAM_TRYBB (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 68/216 (31.48%), Postives = 96/216 (44.44%), Query Frame = 1
Query:   40 FEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLD---EILKPAECTIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYK----TNESSAAMMTEDSGIRKIL 666
            FEG EKRLEV      +     G  +  L  H  D   +++      IVS   NEY+ SYVLSESSLFV   +VI+ TCGT  LL  +P I          V  V +   ++ F   Q  PH S +EE   L  HF         F+ G P ++  + +Y  S       +    L M M GLDR +   +Y           A++ E +G+ +++
Sbjct:   28 FEGPEKRLEV------IMRVVDGTHVSGLLAHDDDVWQKVIDAICAHIVSREFNEYIRSYVLSESSLFVMKDRVILITCGTITLLNCVPLICEAVSTVCGEVEWVSFMHKNYSFPWEQKGPHLSMAEEFKTLRSHF----PSGQPFIFG-PIDSDHYFLYLDSDVVQPSCSDDAQLSMTMYGLDRNQTKHWYSDKMLPTGPETAVIREATGLSEVV 232          
The following BLAST results are available for this feature:
BLAST of FC931239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_TRYCR6.677e-1632.24S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]
DCAM_TRYBB4.328e-1531.48S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]

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Properties
Property NameValue
Genbank descriptionC34103A06EF PostHarvP1 Citrus clementina cDNA clone C34103A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931239 ID=FC931239; Name=FC931239; organism=Citrus clementina; type=EST; length=701bp
CTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGTTA
TGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATC
CTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAATA
CTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAATATCT
TGATTCATATGTCCTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAG
TTATTATCAAAACTTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCC
ATCCTCAAGTTATCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATA
CACTCGCGGAAGCTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTA
GCTTCTCTGAGGAAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGT
ATGGACAGCACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATG
GCATGTTTACTCTGCTTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTT
ACACTCTAGAGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTC
TTCTACAAAACTAATGAAAGCTCAGCGGCTATGATGACCGAGGACTCTGG
CATCAGAAAGATTCTTCCAAATCTGAGATTTGTGATTTTGAGTTTGACCC
T
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