FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 70/210 (33.33%), Postives = 98/210 (46.67%), Query Frame = 1
Query:   85 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLT 690
            IV     G D++D++   R GI VTN     +E  A                     R G W       H    LG  L GK +GI+G+G IGS VA+    FG  I Y SR +K  +       Y ++  L  +SD+L +   LT+ET H+I +  +  + K  +++N GRGA++D   LV  L  G +  A LDVFE+EP      LT
Sbjct:   71 IVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLT 280          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GRHPR_HUMAN (Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 70/212 (33.02%), Postives = 102/212 (48.11%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKE-LLTLDN 699
            +++   + GIDH+ L E ++RGI V    +  ++  A                     +NG W       L G  L    VGI+GLG IG  +A+RL PFG     YT R+ +P  +  F A   +   LAA SD ++V C+LT  T  + NKD    + +  V IN+ RG ++++ +L   L  G++  AGLDV   EP      LLTL N
Sbjct:   76 KVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKN 287          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 68/230 (29.57%), Postives = 104/230 (45.22%), Query Frame = 1
Query:   19 AILCXXXXXXXXXXXXXXXXXEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLW--PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLT 690
            A+LC                 +++   + G DH+D+ E  +RGI VT+     ++  A                     R G W  P +  +  G  L GK +G+VGLG IG   AKRL  F   I Y   +++  V        + ++  L   SD++ +   LT+ET+H+IN++ +  + K   +IN  RG ++D + LV  L  G + GA LDVFE EP      LT
Sbjct:   50 ALLCLLTDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKILYYDIERRWDVETVIPNMEFTDLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLT 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 69/212 (32.55%), Postives = 105/212 (49.53%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA----YTSRK--KKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+  +  G+D+VD++    RGI+V NA  + S   A                     + G W  +    +G  L GK +GI+G+G IGS+V  R   FG  I     Y S++  ++ GV+     ++  L  +SD++ +   LT ET H+I++D    +     I+N  RG +IDE  L   L  GE+ GA LDVFE+EP     LL L+N
Sbjct:   67 KIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRF--MGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGVTV---TDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDALYRALKDGEIAGAALDVFEEEPPEGSPLLELEN 273          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: YN14_YEAST (Putative 2-hydroxyacid dehydrogenase YNL274C OS=Saccharomyces cerevisiae GN=YNL274C PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 68/203 (33.50%), Postives = 96/203 (47.29%), Query Frame = 1
Query:  103 AGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHG---AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPF--YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTL 693
            AG D +D++  ++R I V N  +  S   A                       G WP+ G     P G    GK VGI+GLG IG  + +RL PFG  +  Y +R + P        Y         SD++ V   L   THH+IN + +  +    VI+N  RGA+IDE+ +   L  G++  AGLDVFE EP  +KELL++
Sbjct:   91 AGYDQIDVEPFKKRHIQVANVPDLVSNATADTHVFLLLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRCILERLKPFGFENFIYHNRHQLPSEEEHGCEYVGFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEPKISKELLSM 293          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ERWT9 (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 65/206 (31.55%), Postives = 102/206 (49.51%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYP-LGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP-HXAKELLTLDN 699
            + G D+ D+     RG+L+ +     +E  A                     ++G W    +    G  +  K++GI+G+G IG  +A+R  + FG  I Y +RK        F   Y ++  L A+SD L +   LTE+THH+I ++ +  + +  ++IN GRG ++DE+ L+  L  G L  AGLDVFE EP   + ELL L N
Sbjct:   74 SVGYDNFDVAALNDRGVLLMHTPTVLTETVADTMMALVLSSARRVVEMAERVKSGEWRGSISSDWFGIDVHHKKLGILGMGRIGLALAQRAHLGFGMPILYNARKHHDEAEQRFDAEYCDLDTLLAESDFLCISLPLTEQTHHLIGREQLAKMKRSAILINAGRGPVVDEQALIAALKDGTLHAAGLDVFEQEPLPVSSELLALRN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 69/208 (33.17%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY------TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELL 687
            +IV  +  G+D++D+ E  + G++V NA N  +   A                     ++  W +  AY +GS L GK +GIVGLG IGSE+A+R   FG ++          R KK GV+   +  V      +D++ V   LT+ET  ++NK+ +    K   +IN  RG +IDE  L+  L  G + GA LDVFE EP    +L+
Sbjct:   64 KIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREW-NRTAY-VGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIGVNSRTFEEV---LESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEALENGHVAGAALDVFEVEPPVDNKLV 266          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: YGDH_SCHPO (Putative 2-hydroxyacid dehydrogenase C1773.17c OS=Schizosaccharomyces pombe GN=SPBC1773.17c PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 69/213 (32.39%), Postives = 103/213 (48.36%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR-------KKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLD 696
            ++ V   AG ++VD+    R G+ V N  N  +E  A                     R G W  +    L     GKRVGI+G+G+IG   A++++P GC I Y +R       +K+ G S+    +   L + SDV+ + C LT  TH +I+      + K+GV IIN  RGA+I+E   +  +  G++  AGLDVF +EP   K  L  D
Sbjct:   85 KLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRLGKWRQN--LSLTDDPYGKRVGIIGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASF---VSFDELLSSSDVISINCPLTPATHDLISTKEFEKM-KDGVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLNEPTPNKFWLECD 291          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SERP5 (Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 64/206 (31.07%), Postives = 98/206 (47.57%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP-HXAKELLTLDN 699
            + G D+ D+       +L+ +     +E  A                     + G W    GA   G  +  K +GI+G+G IG  +A+R    FG  + Y +R+        F A   ++  L A+SD + +   LT+ET HMI++D +  + K G++IN GRG ++DE  L+  L  G +  AGLDVFE EP   +  LLTL N
Sbjct:   74 SVGYDNFDVDALNAHNVLLMHTPTVLTETVADTIMSLVLATARRVVEVAERVKAGEWQGSIGADWFGVDVHHKTIGILGMGRIGLALAQRAHFGFGMPVLYNARRTHEEAEQRFNARRCDLDTLLAESDFICITLPLTDETFHMISRDQLAKMKKSGILINAGRGPVVDEAALIEALQNGTIHAAGLDVFEKEPLPVSSPLLTLPN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ENT38 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.218e-19
Identity = 66/206 (32.04%), Postives = 95/206 (46.12%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D+     R IL+ +   A +E  A                     + G W    G    G  + GK +GIVG+G IG  +A+R    F   I Y +R+        F   Y  +  L  ++D + +   LT+ETHH+I K     + K  + IN GRG ++DEK L+  L +GE+  AGLDVFE EP      LLT+ N
Sbjct:   74 SVGYDNFDVDALNTRKILLMHTPYALTETVADTLMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGVDVHGKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHSEAEERFEARYCELETLLQEADYVCLILPLTDETHHLIGKAEFEKMKKSAIFINAGRGPVVDEKALIEALQKGEIHAAGLDVFEQEPLPVDSPLLTMSN 279          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
GYAR_AERPE2.799e-2233.33Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
GRHPR_HUMAN2.799e-2233.02Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
GYAR_THEPD3.655e-2229.57Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
SERA_METTH6.235e-2232.55D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
YN14_YEAST6.894e-2133.50Putative 2-hydroxyacid dehydrogenase YNL274C OS=Sa... [more]
GHRB_ERWT91.176e-2031.55Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
SERA_BACSU2.620e-2033.17D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
YGDH_SCHPO4.468e-2032.39Putative 2-hydroxyacid dehydrogenase C1773.17c OS=... [more]
GHRB_SERP51.300e-1931.07Glyoxylate/hydroxypyruvate reductase B OS=Serratia... [more]
GHRB_ENT382.218e-1932.04Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]

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Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
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