FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ENTAG (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans GN=tkrA PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 65/206 (31.55%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP-FGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI++ +     +E  A                     + G W    G    G  +  K++GI+G+G IG  +A+R    FG  I Y +RK        F   Y ++  L  +SD L +   LTE+THHMI ++ +  +    ++IN GRG ++DE+ L+  L    +  AGLDVFE EP     ELLTL N
Sbjct:   73 SVGYDNFDVEALNQRGIVLIDTPTVLTETVADTMMALVLSSARRVVEVAERVKAGEWRRSIGPDWFGIDVHHKKMGILGMGRIGLALAQRAHHGFGMPILYNARKHHEEAESRFNAQYCDLDTLLRESDFLCISLPLTEQTHHMIGREQLAKMKPSAILINAGRGPVVDEQALIAALKDKTIHAAGLDVFEQEPLPVDSELLTLPN 278          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 66/212 (31.13%), Postives = 101/212 (47.64%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTS---RKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG ++VD++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VAKR   F   I YT    +K+K       Y +++ L  ++D + +  A   + HHMI+ +    +     +IN GRG +++E+ LV  L   ++ GA LDV+E EP   + L +LDN
Sbjct:   68 KIIANYGAGFNNVDVKYAREKDIDVTNTPKASTASTAELTFGLVLAVARRIVEGDKLSRTQGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVAKRAKAFDMDILYTGPHQKKEKEREIGAKYVDLNTLLENADFITINAAYNPDLHHMIDTEQFKLMKSTAYLINAGRGPIVNEEALVKALEDKQIEGAALDVYEFEPEITEGLKSLDN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 68/212 (32.08%), Postives = 95/212 (44.81%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG ++VD+   R++ I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F  +I YT   +K          Y ++  L  ++D + +  A     HH I+K     +     +IN  RG ++ EK LV  L   E+ GA LDVFE EP    EL TLDN
Sbjct:   69 KIITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRAKAFDMNILYTGPHQKVDKEREIGAKYVDLETLLKNADFVTINAAYNPSLHHQIDKAQFEMMKPTSYLINASRGPIVHEKALVQALKDKEIEGAALDVFEFEPEINDELKTLDN 278          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP3 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae (strain 342) GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 65/207 (31.40%), Postives = 99/207 (47.83%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKE--LLTLDN 699
            + G D+ D++    R +L+ +     +E  A                     + G W    G    GS +  K +GIVG+G IG  +A+R    FG  I Y +R++ P     F   Y ++  L  ++D + +   L+EETHH+  +     +    + IN GRG ++DE+ L+  L  GE+  AGLDVFE EP  AK+  LLTL N
Sbjct:   74 SVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGSDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVVDEQALIAALQAGEIHAAGLDVFEHEP-LAKDSPLLTLPN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERPY (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI + +     +E  A                     + G W +  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F   + ++  L A++D L +   +TE+T+HMI ++ +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVFE EP      LLTL N
Sbjct:   74 SVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKIKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERPS (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI + +     +E  A                     + G W +  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F   + ++  L A++D L +   +TE+T+HMI ++ +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVFE EP      LLTL N
Sbjct:   74 SVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERPP (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI + +     +E  A                     + G W +  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F   + ++  L A++D L +   +TE+T+HMI ++ +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVFE EP      LLTL N
Sbjct:   74 SVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERPN (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI + +     +E  A                     + G W +  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F   + ++  L A++D L +   +TE+T+HMI ++ +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVFE EP      LLTL N
Sbjct:   74 SVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQTLIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI + +     +E  A                     + G W +  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F   + ++  L A++D L +   +TE+T+HMI ++ +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVFE EP      LLTL N
Sbjct:   74 SVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERPE (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI + +     +E  A                     + G W +  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F   + ++  L A++D L +   +TE+T+HMI ++ +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVFE EP      LLTL N
Sbjct:   74 SVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
GHRB_ENTAG2.896e-1931.55Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
Y752_STAHJ4.940e-1931.13Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
Y606_STAS18.427e-1932.08Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
GHRB_KLEP38.427e-1931.40Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
GHRB_YERPY1.101e-1829.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPS1.101e-1829.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPP1.101e-1829.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPN1.101e-1829.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPG1.101e-1829.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPE1.101e-1829.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
back to top