FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERPB (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI + +     +E  A                     + G W +  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F   + ++  L A++D L +   +TE+T+HMI ++ +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVFE EP      LLTL N
Sbjct:   74 SVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERPA (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI + +     +E  A                     + G W +  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F   + ++  L A++D L +   +TE+T+HMI ++ +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVFE EP      LLTL N
Sbjct:   74 SVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_YERP3 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ghrB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 61/206 (29.61%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXA-KELLTLDN 699
            + G D+ D++   +RGI + +     +E  A                     + G W +  G    G  +  K +GI+G+G IG  +A+R    F   + YTSR+        F   + ++  L A++D L +   +TE+T+HMI ++ +  +    ++IN GRG ++DE+ L+  L  G +  AGLDVFE EP      LLTL N
Sbjct:   74 SVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ESCF3 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ghrB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 59/194 (30.41%), Postives = 90/194 (46.39%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R +L+ +     +E  A                     + G W    G    GS +  K +GIVG+G IG  +A+R    F   I Y +R++ P     F   Y ++  L  ++D + +   LTEETHH+   +    +    + IN GRG ++DEK L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALNARKVLLMHTPTVLTETVADTLMALILATSRRVVEVAERVKAGEWTASIGPDWFGSDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLTEETHHLFGAEQFAKMKSSAIFINAGRGPVVDEKALISALQKGEIHAAGLDVFEREP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP7 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 63/207 (30.43%), Postives = 99/207 (47.83%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKE--LLTLDN 699
            + G D+ D++    R +L+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    FG  I Y +R++ P     F   Y ++  L  ++D + +   L+EETHH+  +     +    + IN GRG ++DE+ L+  L  GE+  AGLDVFE EP  AK+  LL+L N
Sbjct:   74 SVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVVDEQALIAALQNGEIHAAGLDVFEHEP-LAKDSPLLSLPN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 1
Query:  295 GSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            G+ +  K +GI+G+G IG  VA+R    F   + Y +R+        F A   ++  L A+SD L +   LT ETHH+I ++ +  +    ++IN+GRGA++DE  L   LV+G + GAGLDVF  EP
Sbjct:  136 GTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEQRFNARHCDLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQGAGLDVFVKEP 263          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ENTS8 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  295 GSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP-HXAKELLTLDN 699
            G  +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L A+SD + V   LT+ETHHMI  +    + K  + IN GRG ++DE  L+  L  GE+  AGLDVFE EP      LLT+ N
Sbjct:  140 GCDVHHKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHSEAEERFNARYCDLDTLLAESDFVCVILPLTDETHHMIGAEQFRKMKKSAIFINAGRGPVVDENALIAALQSGEIHAAGLDVFEQEPLSKDSPLLTMKN 279          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP-HXAKELLTLDN 699
            ++V   + G D+ D++  + RG++ T+      +  A                     R G W       L G  +  + +GI+G+G IG + A+R    F   + Y +R +K          YA +  L   SD +++   LT+ET+HMI +     +    + +N+ RG  +DEK L+  L  G + GAGLDV+E EP      LL LDN
Sbjct:   71 KVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHRKQETEDSIGVKYAELDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEPVTQDNPLLQLDN 282          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_ERWCT (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia carotovora subsp. atroseptica GN=ghrB PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 56/194 (28.87%), Postives = 92/194 (47.42%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D  ++     +G+++ +     +E  A                     + G W    G+   G+ +  K +GI+G+G IG  VA+R    F   + Y +R+        F A   ++  L A+SD L +   LT ETHH+I ++ +  +    ++IN+GRGA++DE  L   LV+G +  AGLDVF  EP
Sbjct:   70 SVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVVERVKAGEWKGGVGSDWFGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEERFNARHCDLDTLLAESDFLCITLPLTAETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQAAGLDVFVKEP 263          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R + I VTN   A +   A                     R   +   G  PL   G  + GK +GI+GLG IGS VA+R   F   + YT   +K          Y ++  L  ++D + +  A   + HH+I+ +    +     +IN  RG ++ E+ LV  L   E+ GA LDV+E EP    +L +L+N
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKNNEIEGAALDVYEFEPDITDDLKSLNN 277          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
GHRB_YERPB1.101e-1829.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPA1.101e-1829.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERP31.101e-1829.61Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_ESCF31.877e-1830.41Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_KLEP74.182e-1830.43Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
GHRB_PECCP9.317e-1838.28Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
GHRB_ENTS81.217e-1739.29Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
TKRA_BACSU1.589e-1728.30Probable 2-ketogluconate reductase OS=Bacillus sub... [more]
GHRB_ERWCT2.076e-1728.87Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
Y2389_STAAR2.711e-1728.30Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
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