FC931253

Overview
NameFC931253
Unique NameFC931253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: TKRA_DICDI (Probable 2-ketogluconate reductase OS=Dictyostelium discoideum GN=tkrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 67/216 (31.02%), Postives = 99/216 (45.83%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGG-----KRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP-HXAKELLTLDN 699
            E V   + G D+ DL     R I + +  N  ++  A                     RNG W      PL  +  G     K+VGI+G+G IG  +AKR  + F   +AY SR +   V   + A   ++  + + SD + V    ++ET H  +    + +    + IN GRG  +DE  L+  L  G++ GAGLDVFE EP +   +LLTLDN
Sbjct:   77 ECVSAISVGYDNYDLVVLNDRKIPLMHTPNVLNDSMADIMMGLMITVARKLAYCDKRMRNGEWNG----PLDKSWFGLEVHHKKVGIIGMGRIGEVLAKRCRMGFDMEVAYYSRSRHLKVEELYDAKHQDLDTILSTSDFICVVLPGSQETKHFFSFGQFSKMKNSAIFINAGRGMTVDEVALIDALETGKIAGAGLDVFEKEPLNKDSKLLTLDN 288          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: DHGY_HYPME (Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 63/206 (30.58%), Postives = 87/206 (42.23%), Query Frame = 1
Query:  106 GIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            G DH+DL  C+ RGI V NA +  +   A                     R   WP  G  PL   G  L  K +GI G GSIG  +AKR   F   I Y      S   +      F+ ++  L + S    +    T ET +  NK  + +L +  +++N  RG L+D + +V  L  G L  AG DVF  EP+  +    L N
Sbjct:   79 GFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWP--GWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN 282          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 64/211 (30.33%), Postives = 93/211 (44.08%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            ++V  +  G+D+VDL+   R+GILV N  N  S   A                     ++G W       +G+ L GK +GI+GLG IG EVA R+  FG           P VS  F   V  L  +      D + V   L   T  ++N +      K   ++N  RG ++DE  L+  L  G+  GA LDVF +EP   + L+  +N
Sbjct:   71 QVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF--MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASF--GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 64/211 (30.33%), Postives = 94/211 (44.55%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            ++V  +  G+D+VDL+   R+GILV N  N  S   A                     ++G W D   + +G+ L GK +GI+GLG IG EVA R+  FG           P V+  F   V  L  +      D + V   L   T  ++N        K   ++N  RG ++DE  L+  L  G+  GA LDVF +EP   + L+  +N
Sbjct:   71 QVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKW-DRKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPIISPEVAASF--GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 64/211 (30.33%), Postives = 93/211 (44.08%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            ++V  +  G+D+VDL+   R+GILV N  N  S   A                     ++G W       +G+ L GK +GI+GLG IG EVA R+  FG           P VS  F   V  L  +      D + V   L   T  ++N +      K   ++N  RG ++DE  L+  L  G+  GA LDVF +EP   + L+  +N
Sbjct:   71 QVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF--MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASF--GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 64/211 (30.33%), Postives = 92/211 (43.60%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            ++V  +  G+D+VDL+   R+GILV N  N  S   A                     ++G W       +G+ L GK +GI+GLG IG EVA R+  FG           P VS  F   V  L  +      D + V   L   T  ++N        K   ++N  RG ++DE  L+  L  G+  GA LDVF +EP   + L+  +N
Sbjct:   71 QVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKKF--MGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASF--GVQQLPLEQIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVCVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVNHEN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: GHRB_SHIFL (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri GN=ghrB PE=3 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 57/194 (29.38%), Postives = 88/194 (45.36%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R+   F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRVHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 60/212 (28.30%), Postives = 94/212 (44.34%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            +I+    AG +++D++  R++ I VTN  +A +   A                     R   +   G  PL   G  + GK +GI+GLG IG  VAKR   F   + YT   +K          Y ++  L  ++D + +  A     HHMI+ +    +     +IN GRG +++E+ LV  L    + GA LDV+E EP     L +  N
Sbjct:   68 KIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITINAAYNPSLHHMIDTEQFNKMKSTAYLINAGRGPIVNEQSLVEALDNKAIEGAALDVYEFEPEITDALKSFKN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 63/211 (29.86%), Postives = 94/211 (44.55%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            ++V  +  G+D+VDL+   R+G+LV N  N  S   A                     ++G W D   + +G+ L GK +GI+GLG IG EVA R+  FG           P V+  F   V  L  +      D + V   L   T  ++N        K   ++N  RG ++DE  L+  L  G+  GA LDVF +EP   + L+  +N
Sbjct:   71 QVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKW-DRKKF-MGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPIISPEVAASF--GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEN 277          
BLAST of FC931253 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 63/211 (29.86%), Postives = 93/211 (44.08%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHXAKELLTLDN 699
            ++V  +  G+D+VDL+   R+G+LV N  N  S   A                     ++G W       +G+ L GK +GI+GLG IG EVA R+  FG           P VS  F   V  L  +      D + V   L   T  ++N +      K   ++N  RG ++DE  L+  L  G+  GA LDVF +EP   + L+  +N
Sbjct:   71 QVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF--MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASF--GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEN 277          
The following BLAST results are available for this feature:
BLAST of FC931253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
TKRA_DICDI1.030e-1631.02Probable 2-ketogluconate reductase OS=Dictyosteliu... [more]
DHGY_HYPME1.030e-1630.58Glycerate dehydrogenase OS=Hyphomicrobium methylov... [more]
SERA_PANTR1.345e-1630.33D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_MOUSE1.345e-1630.33D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]
SERA_HUMAN1.345e-1630.33D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
SERA_BOVIN1.345e-1630.33D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
GHRB_SHIFL1.345e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
Y1888_STAEQ1.757e-1628.30Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
SERA_RAT1.757e-1629.86D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
SERA_MACFA1.757e-1629.86D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionC34103B08EF PostHarvP1 Citrus clementina cDNA clone C34103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931253 ID=FC931253; Name=FC931253; organism=Citrus clementina; type=EST; length=700bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAGGACGAGCCTCATNGTGCCAAGGAGCTGCTTACATTGGATAATG
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