FC931255

Overview
NameFC931255
Unique NameFC931255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BORPA (Lipid A export ATP-binding/permease protein msbA OS=Bordetella parapertussis GN=msbA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 66/223 (29.60%), Postives = 113/223 (50.67%), Query Frame = 1
Query:   28 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYT--DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            P  GK++ R +  R+       +  +S      +   +VGR+GSGK+TL+  L R V P                    R+ LS++ QD V+F+ T+ +NV      T  D ++ +AL    L + V      + + V +N    S GQRQ + + R L+K   +L+LDEAT+++D  ++  +Q SL +     T + IAHR+++V ++D +++L  G I E+
Sbjct:  377 PVRGKVEFRAVSHRFPDADRDTVSAVSFLVEPGQTVALVGRSGSGKTTLVNMLPRFVLPDGGDILFDDVPIQDLTLRSLRSHLSLVSQDVVLFDDTIAANVGYGAGGTVDDARVRDALAAANLLEFVDGLPLGIHTPVGQNAARLSGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEH 599          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: MSBA_BORBR (Lipid A export ATP-binding/permease protein msbA OS=Bordetella bronchiseptica GN=msbA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 66/223 (29.60%), Postives = 113/223 (50.67%), Query Frame = 1
Query:   28 PSHGKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVDPLEEYT--DEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEEY 690
            P  GK++ R +  R+       +  +S      +   +VGR+GSGK+TL+  L R V P                    R+ LS++ QD V+F+ T+ +NV      T  D ++ +AL    L + V      + + V +N    S GQRQ + + R L+K   +L+LDEAT+++D  ++  +Q SL +     T + IAHR+++V ++D +++L  G I E+
Sbjct:  377 PVRGKVEFRAVSHRFPDADRDTVSAVSFLVEPGQTVALVGRSGSGKTTLVNMLPRFVLPDGGDILFDDVPIQDLTLRSLRSHLSLVSQDVVLFDDTIAANVGYGAGGTVDDARVRDALAAANLLEFVDGLPLGIHTPVGQNAARLSGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEH 599          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y2003_STAA8 (Putative multidrug export ATP-binding/permease protein SAOUHSC_02003 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02003 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 59/218 (27.06%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+ID+  +  +Y  +   +L+ I+ +    +    VG +G GKSTLI  + R  +  +                  R ++ ++ QD ++F  TV+ N+       TDE++ EA       D +       D++V E G   S GQ+Q + + R+ L    IL+LDEAT+++D  ++++IQ++L     D T + +AHR++++  +D ++++ +G I E
Sbjct:  338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1956_STAAR (Putative multidrug export ATP-binding/permease protein SAR1956 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1956 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 59/218 (27.06%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+ID+  +  +Y  +   +L+ I+ +    +    VG +G GKSTLI  + R  +  +                  R ++ ++ QD ++F  TV+ N+       TDE++ EA       D +       D++V E G   S GQ+Q + + R+ L    IL+LDEAT+++D  ++++IQ++L     D T + +AHR++++  +D ++++ +G I E
Sbjct:  338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1924_STAAC (Putative multidrug export ATP-binding/permease protein SACOL1924 OS=Staphylococcus aureus (strain COL) GN=SACOL1924 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 59/218 (27.06%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+ID+  +  +Y  +   +L+ I+ +    +    VG +G GKSTLI  + R  +  +                  R ++ ++ QD ++F  TV+ N+       TDE++ EA       D +       D++V E G   S GQ+Q + + R+ L    IL+LDEAT+++D  ++++IQ++L     D T + +AHR++++  +D ++++ +G I E
Sbjct:  338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1866_STAAM (Putative multidrug export ATP-binding/permease protein SAV1866 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1866 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 59/218 (27.06%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+ID+  +  +Y  +   +L+ I+ +    +    VG +G GKSTLI  + R  +  +                  R ++ ++ QD ++F  TV+ N+       TDE++ EA       D +       D++V E G   S GQ+Q + + R+ L    IL+LDEAT+++D  ++++IQ++L     D T + +AHR++++  +D ++++ +G I E
Sbjct:  338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1847_STAA3 (Putative multidrug export ATP-binding/permease protein SAUSA300_1847 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_1847 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 59/218 (27.06%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+ID+  +  +Y  +   +L+ I+ +    +    VG +G GKSTLI  + R  +  +                  R ++ ++ QD ++F  TV+ N+       TDE++ EA       D +       D++V E G   S GQ+Q + + R+ L    IL+LDEAT+++D  ++++IQ++L     D T + +AHR++++  +D ++++ +G I E
Sbjct:  338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1806_STAAW (Putative multidrug export ATP-binding/permease protein MW1806 OS=Staphylococcus aureus (strain MW2) GN=MW1806 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 59/218 (27.06%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+ID+  +  +Y  +   +L+ I+ +    +    VG +G GKSTLI  + R  +  +                  R ++ ++ QD ++F  TV+ N+       TDE++ EA       D +       D++V E G   S GQ+Q + + R+ L    IL+LDEAT+++D  ++++IQ++L     D T + +AHR++++  +D ++++ +G I E
Sbjct:  338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1788_STAAS (Putative multidrug export ATP-binding/permease protein SAS1788 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1788 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 59/218 (27.06%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+ID+  +  +Y  +   +L+ I+ +    +    VG +G GKSTLI  + R  +  +                  R ++ ++ QD ++F  TV+ N+       TDE++ EA       D +       D++V E G   S GQ+Q + + R+ L    IL+LDEAT+++D  ++++IQ++L     D T + +AHR++++  +D ++++ +G I E
Sbjct:  338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555          
BLAST of FC931255 vs. ExPASy Swiss-Prot
Match: Y1683_STAAN (Putative multidrug export ATP-binding/permease protein SA1683 OS=Staphylococcus aureus (strain N315) GN=SA1683 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 59/218 (27.06%), Postives = 112/218 (51.38%), Query Frame = 1
Query:   37 GKIDLRDLQVRYAPHMPFVLRGISCTFPGEKKTGIVGRTGSGKSTLIQTLFRIVEPAAXXXXXXXXXXXXXXXXXXRTRLSIIPQDPVMFEGTVRSNVD-PLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKRRKILMLDEATASVDTATDNLIQQSLRQHFSDCTVITIAHRITSVIDSDMVLLLSHGLIEE 687
            G+ID+  +  +Y  +   +L+ I+ +    +    VG +G GKSTLI  + R  +  +                  R ++ ++ QD ++F  TV+ N+       TDE++ EA       D +       D++V E G   S GQ+Q + + R+ L    IL+LDEAT+++D  ++++IQ++L     D T + +AHR++++  +D ++++ +G I E
Sbjct:  338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555          
The following BLAST results are available for this feature:
BLAST of FC931255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 455
Match NameE-valueIdentityDescription
MSBA_BORPA2.350e-2129.60Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORBR2.350e-2129.60Lipid A export ATP-binding/permease protein msbA O... [more]
Y2003_STAA83.069e-2127.06Putative multidrug export ATP-binding/permease pro... [more]
Y1956_STAAR3.069e-2127.06Putative multidrug export ATP-binding/permease pro... [more]
Y1924_STAAC3.069e-2127.06Putative multidrug export ATP-binding/permease pro... [more]
Y1866_STAAM3.069e-2127.06Putative multidrug export ATP-binding/permease pro... [more]
Y1847_STAA33.069e-2127.06Putative multidrug export ATP-binding/permease pro... [more]
Y1806_STAAW3.069e-2127.06Putative multidrug export ATP-binding/permease pro... [more]
Y1788_STAAS3.069e-2127.06Putative multidrug export ATP-binding/permease pro... [more]
Y1683_STAAN3.069e-2127.06Putative multidrug export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionC34103B10EF PostHarvP1 Citrus clementina cDNA clone C34103B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931255 ID=FC931255; Name=FC931255; organism=Citrus clementina; type=EST; length=698bp
AGAAAAAGTCGGCCCAACCATTCTTGGCCATCACATGGGAAGATTGACCT
GCGTGATCTTCAGGTTCGCTATGCACCACACATGCCCTTTGTGTTGCGAG
GTATCTCGTGTACTTTCCCAGGGGAAAAGAAAACTGGTATTGTAGGGAGG
ACGGGCAGTGGTAAATCAACTCTCATTCAAACACTGTTCCGGATTGTTGA
ACCTGCTGCTGGTCAGATTCTTATAGATGGCATCGATATCTCATTGATTG
GACTACATGATTTGCGGACAAGACTAAGCATTATTCCCCAGGATCCTGTC
ATGTTTGAAGGGACTGTGCGAAGCAATGTAGACCCTCTTGAAGAATATAC
GGATGAGCAAATATGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAG
TTAGGAAGAAGGAAGGGAAACTAGATTCAAAAGTTACTGAGAATGGAGAG
AACTGGAGCATGGGCCAGAGACAGCTGGTATGTCTTGGCCGTGTGCTACT
GAAAAGAAGAAAAATCTTGATGCTTGATGAAGCTACGGCATCTGTTGACA
CTGCTACTGATAATCTGATCCAACAAAGTCTCCGGCAGCACTTCTCTGAC
TGCACAGTCATAACCATTGCTCATCGGATAACGTCTGTTATTGACAGTGA
TATGGTTCTGCTTCTCAGTCATGGACTCATCGAGGAATATGATTCCCC
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