FC931260

Overview
NameFC931260
Unique NameFC931260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 63/184 (34.24%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  204 NLVHLDQINEET---GPKIALN-PDKWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY-----PE----GKMSQHFASLKPG-DVVEVKGPIEKLRYS----------PNMKKHIGMIAGWHRYTPMLQVIEAILKIQ 680
            +L HL  I E T   G  IAL+ P + +  +L D   +SH+  LFRF+   S + LGL V   I   A +      + K  +R YTP S  +  G F+LL+KVY     P+    G M+Q+  SL+ G   ++VKGP+  + Y+              + + MI G    TPM QVI+A+L+ Q
Sbjct:  627 SLSHLAPIREATKVAGAPIALSSPREKVPCRLVDKKELSHDVRLFRFALPSSDQVLGLPVGKHIFVCATI------DGKLCMRAYTPTSMVDEIGQFELLVKVYFRDEHPKFPNGGLMTQYLESLQVGSSSIDVKGPLGHVEYTGRGNFVINGKQRRARRLAMICGSSGITPMYQVIQAVLRDQ 804          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 54/162 (33.33%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  249 IALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRY----------SPNMKKHIGMIAGWHRYTPMLQVIEAILK 674
            +AL P + I  KL D   +SH+   FRF+     + LGL V   I   A +      + K  +R YTP S  +  G+F+L++K+Y +         G+MSQ+  SL  G  V+VKGP+  + Y               K + M+AG    TP+ QV++AILK
Sbjct:  647 VALIPREKIPCKLVDKKSISHDVRKFRFALPSEDQVLGLPVGKHIFLCAII------DDKLCMRAYTPTSTVDEVGYFELVVKIYFKGIVPKFPNGGQMSQYLDSLPLGAFVDVKGPLGHIEYQGRGNFLVHGKRKFAKKLAMLAGGTGITPVYQVMQAILK 802          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NB5R5_HUMAN (NADH-cytochrome b5 reductase-like OS=Homo sapiens GN=CYB5RL PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 44/151 (29.14%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  255 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGWHRYTPMLQVIEAILKIQMTHSGVTAV 707
            LNP+ ++ F +    R++ +++  RF+   +++LGL     ++ R  +  D E     + R YTPIS   A+G+F++LIK Y  G MS++  S + GD    +GP     Y PN    + ++A      PM+ ++++I   +   + VT V
Sbjct:   71 LNPETFVAFCIIAMDRLTKDTYRVRFALPGNSQLGLRPGQHLILRG-IVDDLE-----IQRAYTPISPANAEGYFEVLIKCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLV 215          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 53/162 (32.72%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  249 IALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRY----------SPNMKKHIGMIAGWHRYTPMLQVIEAILK 674
            +AL P + I  KL D   +SH+   FRF+     + LGL V   I   A +      + K  +R YTP S  +  G+F+L++K+Y +         G+MSQ+  S+  G  ++VKGP+  + Y               K + MIAG    TP+ QV++AILK
Sbjct:  642 VALIPREKIPCKLIDKQSISHDVRKFRFALPSEDQVLGLPVGKHIFLCAVI------DDKLCMRAYTPTSTIDEVGYFELVVKIYFKGIHPKFPNGGQMSQYLDSMPLGSFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQAILK 797          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 53/162 (32.72%), Postives = 79/162 (48.77%), Query Frame = 3
Query:  249 IALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRY----------SPNMKKHIGMIAGWHRYTPMLQVIEAILK 674
            +AL P + I  KL D   +SH+   F+F+     + LGL V   I   A +      + K  +R YTP S  +  G F+L++K+Y +         G+MSQH  SL  G  ++VKGP+  + Y               K + MIAG    TP+ QV+++ILK
Sbjct:  649 VALIPREKIPCKLVDKQSISHDVRKFKFALPSEDQVLGLPVGKHIFLCATV------DDKLCMRAYTPTSTVDEVGFFELVVKIYFKGVHPKFPNGGQMSQHLDSLPIGAFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQSILK 804          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 50/160 (31.25%), Postives = 75/160 (46.88%), Query Frame = 3
Query:  255 LNPDKWIGFKLQDTARVSHNSHLFRFSFD-PSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRY----------SPNMKKHIGMIAGWHRYTPMLQVIEAILK 674
            +NP   +  +L +   +SH+   FRF+       LGL V   I   A +      N K  +R YTP S  +  G+F+L++K+Y           G MSQ+  SL  G  +E+KGP+  + Y           P     + M+AG    TP+ Q+I+AILK
Sbjct:  657 VNPRAKVPVQLVEKTSISHDVRKFRFALPVEDMVLGLPVGKHIFLCATI------NDKLCLRAYTPSSTVDVVGYFELVVKIYFGGVHPRFPNGGLMSQYLDSLPIGSTLEIKGPLGHVEYLGKGSFTVHGKPKFADKLAMLAGGTGITPVYQIIQAILK 810          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 53/162 (32.72%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  249 IALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRY----------SPNMKKHIGMIAGWHRYTPMLQVIEAILK 674
            +AL P + I  KL D   +S +   FRF+     + LGL V   I   A +      + K  +R YTP S  +  G+F+L++K+Y +         G+MSQ+  SL+ G  ++VKGP+  + Y               K + MIAG    TP+ QV++AILK
Sbjct:  642 VALIPREKIPCKLIDKQSISPDVRKFRFALPSEDQVLGLPVGKHIFLCAVI------DDKLCMRAYTPTSTIDEVGYFELVVKIYFKGIHPKFPNGGQMSQYLDSLQLGSFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQAILK 797          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: MCR1B_VANPO (NADH-cytochrome b5 reductase 2-B OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MCR1B PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 46/162 (28.40%), Postives = 73/162 (45.06%), Query Frame = 3
Query:  189 YFSSPNLVHLDQINEETGPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKL-GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGWHRYTPMLQVIEAIL 671
            YFS+ + +  + ++ +T          W+   L     +SH++  F F       + G+   S +L R        G     +RPYTP+S  E +G  + +IK  P G MS H  SLKP D V   GPI K  +  N    + ++      TP+ Q++ +IL
Sbjct:   28 YFSTGSRLANEALHNKTFKGFKGPASTWVDLPLVKFEDLSHDTRKFTFKLPNDDDVSGISPLSFLLARPHGTWSLRG-----IRPYTPVSLPETQGVIEFVIKHVPNGGMSSHMFSLKPNDTVSFTGPIVKYEWKQNKFDSVTLLGAGSGITPLYQLMGSIL 184          
The following BLAST results are available for this feature:
BLAST of FC931260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
NIA2_HORVU1.622e-1234.24Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]
NIA_PETHY2.119e-1233.33Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NB5R5_HUMAN2.119e-1229.14NADH-cytochrome b5 reductase-like OS=Homo sapiens ... [more]
NIA2_TOBAC2.767e-1232.72Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA_SOLLC3.614e-1232.72Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]
NIA2_ARATH4.720e-1231.25Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA1_TOBAC1.373e-1132.72Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
MCR1B_VANPO1.373e-1128.40NADH-cytochrome b5 reductase 2-B OS=Vanderwaltozym... [more]

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Properties
Property NameValue
Genbank descriptionC34103C03EF PostHarvP1 Citrus clementina cDNA clone C34103C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931260 ID=FC931260; Name=FC931260; organism=Citrus clementina; type=EST; length=727bp
GACTTTTCTTTGCTTTGCTTCTTCTCCAACATTAGAAAATGGCTACGACC
TTCTTCAGAAGACTGGCTAAAGCTACTCCAATTGCATTCAACGAGGCATT
TGGAGGGCAACCCAAGTCCGATTTCAACAAATTTCGATTTCCCTTTGGAG
CAATCGCTGCTGTTGCTGGTGGAGTCTCCTATTACTGTTACTTTTCATCC
CCAAATTTGGTTCATCTAGATCAAATCAATGAAGAGACGGGTCCAAAAAT
TGCTCTCAATCCGGACAAGTGGATTGGATTTAAGTTGCAAGACACTGCAA
GGGTAAGCCACAATAGTCATTTGTTCAGGTTTTCATTTGATCCATCTGCC
AAGTTGGGTTTGGATGTTGCTTCATGCATCCTTACAAGGGCTCCATTAGG
ACAAGATGCTGAAGGAAATACAAAATATGTTGTACGGCCGTATACTCCTA
TATCAGATACAGAAGCTAAGGGACACTTTGACTTGTTAATTAAGGTTTAT
CCTGAGGGTAAAATGAGTCAGCATTTTGCTAGCTTAAAACCAGGGGATGT
AGTTGAAGTGAAAGGACCCATTGAAAAGCTCCGATACTCTCCCAATATGA
AGAAACACATCGGCATGATAGCTGGGTGGCACAGGTATACTCCTATGCTT
CAGGTAATTGAGGCTATACTGAAGATCCAGATGACACACTCAGGTGTCAC
TGCTGTATGGCATATATCCCAGATGAT
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