FC931260

Overview
NameFC931260
Unique NameFC931260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: MCR1_CANGA (NADH-cytochrome b5 reductase 2 OS=Candida glabrata GN=MCR1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 59/178 (33.15%), Postives = 90/178 (50.56%), Query Frame = 3
Query:  138 FPFGAIAAVAGGVSYYCYFSSPNLVHLDQINEETGPKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKL-GLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGWHRYTPMLQVIEAI 668
            F  GA+A  AG +    Y +  N +      +   PK+ +   KWI  +L+     SH++  F F       + GL +AS +LT+       +GN   V+RPYTP+SD   KG+ + +IK Y  GKM+ H   LKP D +  +GPI K ++ PN    I ++ G    TP+ Q++  I
Sbjct:   16 FAIGAVAVTAGAL----YLNGWNTI------KNENPKVFIGDRKWIDLELEKIIEESHDTKRFFFKLPTDDSVSGLTLASAVLTKF---MTPKGNP--VIRPYTPVSDLSEKGYIEFVIKHYEGGKMTDHLFQLKPKDTLAFQGPIPKWQWKPNSFDTITLLGGGTGITPLYQLVHHI 178          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NCB5R_VANPO (NADH-cytochrome b5 reductase 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=CBR1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  267 KWIGFKLQDTARVSHNSHLFRFSFDPSAK-LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPIS-DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGWHRYTPMLQVIEAILKIQMTHSGVTAVW 710
            +++ F L    +++ NS ++RF        LGL +   I  +A +      +   VVR YTPIS D+EAKG+F+LLIK Y +GK+S+ F SLK GD ++V+GP     Y+    KH+ MIAG    TPM Q+I++I +     + VT ++
Sbjct:   42 EYMQFPLVSIKKLNRNSAIYRFKLPTDEHVLGLPIGQHITIKAHI------DGSEVVRSYTPISLDSEAKGYFELLIKSYEQGKISKMFTSLKIGDTIDVQGPKGFYEYTDRSSKHLAMIAGGSGLTPMYQIIKSIAENPKDKTKVTFIY 185          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NB5R1_RAT (NADH-cytochrome b5 reductase 1 OS=Rattus norvegicus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 70/173 (40.46%), Postives = 94/173 (54.34%), Query Frame = 3
Query:  243 PKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK--LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPE---------GKMSQHFASLKPGDVVEVKGPIEKLRYS--------PNMK--------KHIGMIAGWHRYTPMLQVIEAILKI 677
            P++ L +PD+    +L D   VSHN+  FRF+  P+A   LGL V   +   A +      +   V+RPYTP++  E +G+ DL+IKVY +         GKMSQ+  SLK GDVVE +GP   L Y+        PN K        K +GMIAG    TPMLQ+I AILK+
Sbjct:   36 PQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFAL-PTAHHILGLPVGKHVYLSARI------DGSQVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFSEGGKMSQYLDSLKIGDVVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKV 201          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NB5R1_MOUSE (NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 71/173 (41.04%), Postives = 95/173 (54.91%), Query Frame = 3
Query:  243 PKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK--LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY--------PE-GKMSQHFASLKPGDVVEVKGPIEKLRYS--------PNMK--------KHIGMIAGWHRYTPMLQVIEAILKI 677
            P++ L +PD+    +L D   VSHN+  FRF+  P+A   LGL V   +   A +      +   V+RPYTP++  E +G+ DL+IKVY        PE GKMSQ+  SLK GD+VE +GP   L Y+        PN K        K +GMIAG    TPMLQ+I AILK+
Sbjct:   36 PQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFAL-PTAHHILGLPVGKHVYLSARI------DGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDMVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKV 201          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NB5R1_HUMAN (NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=CYB5R1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 70/168 (41.67%), Postives = 92/168 (54.76%), Query Frame = 3
Query:  255 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK--LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY--------PE-GKMSQHFASLKPGDVVEVKGPIEKLRYS----------------PNMKKHIGMIAGWHRYTPMLQVIEAILKI 677
            L+P++    +L D   VSHN+  FRF+  P+A   LGL V   I     L    +G+   V+RPYTP++  E +G+ DL+IKVY        PE GKMSQ+  SLK GDVVE +GP   L Y+                P + K +GMIAG    TPMLQ+I AILK+
Sbjct:   41 LDPNEKYLLRLLDKTTVSHNTKRFRFAL-PTAHHTLGLPVGKHIY----LSTRIDGSL--VIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLGMIAGGTGITPMLQLIRAILKV 201          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NCB5R_MORAP (NADH-cytochrome b5 reductase 1 OS=Mortierella alpina GN=CBR1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = 3
Query:  255 LNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAKLGLDVASCILTRAPLGQD----AEGNTKYVVRPYTPISDTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGWHRYTPMLQVIEAILK 674
            ++P ++  FKL D    S N+ +++F+      L            P+GQ     A  N K + R YTP S ++  GHF L IK YP+G +S+ F+ L  GD +  +GP  +  Y+PNM + IGMIAG    TPMLQ+I AI+K
Sbjct:   53 MDPKEYRKFKLVDKVHCSPNTAMYKFALPHEDDL---------LNLPIGQHISIMANINGKDISRSYTPTSSSDDVGHFVLCIKSYPQGNISKMFSELSIGDSINARGPKGQFSYTPNMCRAIGMIAGGTGLTPMLQIIRAIVK 187          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NB5R1_BOVIN (NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CYB5R1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 69/171 (40.35%), Postives = 93/171 (54.39%), Query Frame = 3
Query:  243 PKIALNPDKWIGFKLQDTARVSHNSHLFRFSFDPSAK--LGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY--------PE-GKMSQHFASLKPGDVVEVKGPIEKLRYS--------PNMK--------KHIGMIAGWHRYTPMLQVIEAILK 674
            P   L+P++    +L D   V+HN+  FRF+  P+A   LGL V   +   A +      +   V+RPYTP++  E +G+ DL+IKVY        PE GKMSQ+  SLK GDVVE +GP   L Y+        PN K        +++GMIAG    TPMLQ+I AILK
Sbjct:   37 PVTLLDPNEKYQLRLLDKTTVNHNTKRFRFAL-PTAHHVLGLPVGKHVYLSARI------DGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDVVEFRGPSGLLTYAGKGKFNIQPNKKAPPEARVARNLGMIAGGTGITPMLQLIRAILK 200          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NCB5R_CANGA (NADH-cytochrome b5 reductase 1 OS=Candida glabrata GN=CBR1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  279 FKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPIS-DTEAKGHFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYSPNMKKHIGMIAGWHRYTPMLQVIEAILKIQMTHSGVTAVW 710
            F+L +  +++HN+  ++F   D S  LGL +   I  +  +G       K V R YTP S D E  G F+LL+K YPEG +S+H   +K G+ + + GP     Y PN+ KH+ M+AG    TPM Q+++AI +     + VT ++
Sbjct:   45 FELVEKEQLTHNTAKYKFKLADESHVLGLPIGQHITVKTIIGG------KPVSRSYTPTSLDEECVGFFELLVKSYPEGNISKHIGDMKIGEKINISGPRGFYEYVPNVHKHLAMVAGGTGITPMFQIMKAIARDPSDKTRVTLLY 184          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NB5R3_BOVIN (NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CYB5R3 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 70/181 (38.67%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  231 EETGPKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRYS--------PNMK--------KHIGMIAGWHRYTPMLQVIEAILKIQMTHS 692
            + + P I L NPD     +L D   +SH++  FRF+   P   LGL V   I   A +    +GN   V+RPYTP+S  + KG  DL+IKVY           GKMSQ+  S+K GD +E +GP   L Y         P+ K        K +GMIAG    TPMLQVI AI+K    H+
Sbjct:   27 QRSTPAITLENPDIKYPLRLIDKEVISHDTRRFRFALPSPEHILGLPVGQHIYLSARI----DGNL--VIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSDPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHT 201          
BLAST of FC931260 vs. ExPASy Swiss-Prot
Match: NB5R3_PIG (NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus scrofa GN=CYB5R3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 71/177 (40.11%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  243 PKIAL-NPDKWIGFKLQDTARVSHNSHLFRFSF-DPSAKLGLDVASCILTRAPLGQDAEGNTKYVVRPYTPISDTEAKGHFDLLIKVY---------PEGKMSQHFASLKPGDVVEVKGPIEKLRY--------------SPNMK--KHIGMIAGWHRYTPMLQVIEAILKIQMTHS 692
            P I L NPD     +L D   V+H++  FRF+   P   LGL V   I   A +    +GN   V+RPYTP+S  + KG  DL+IKVY           GKMSQ+  S+K GD +E +GP   L Y              SP +K  K +GMIAG    TPMLQVI AI+K    H+
Sbjct:    3 PAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPEHILGLPVGQHIYLSARI----DGNL--VIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHT 173          
The following BLAST results are available for this feature:
BLAST of FC931260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
MCR1_CANGA1.370e-1933.15NADH-cytochrome b5 reductase 2 OS=Candida glabrata... [more]
NCB5R_VANPO3.052e-1938.00NADH-cytochrome b5 reductase 1 OS=Vanderwaltozyma ... [more]
NB5R1_RAT3.052e-1940.46NADH-cytochrome b5 reductase 1 OS=Rattus norvegicu... [more]
NB5R1_MOUSE3.052e-1941.04NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=... [more]
NB5R1_HUMAN5.207e-1941.67NADH-cytochrome b5 reductase 1 OS=Homo sapiens GN=... [more]
NCB5R_MORAP6.800e-1938.19NADH-cytochrome b5 reductase 1 OS=Mortierella alpi... [more]
NB5R1_BOVIN8.881e-1940.35NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CY... [more]
NCB5R_CANGA4.408e-1835.62NADH-cytochrome b5 reductase 1 OS=Candida glabrata... [more]
NB5R3_BOVIN9.819e-1838.67NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CY... [more]
NB5R3_PIG1.282e-1740.11NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus s... [more]

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Properties
Property NameValue
Genbank descriptionC34103C03EF PostHarvP1 Citrus clementina cDNA clone C34103C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931260 ID=FC931260; Name=FC931260; organism=Citrus clementina; type=EST; length=727bp
GACTTTTCTTTGCTTTGCTTCTTCTCCAACATTAGAAAATGGCTACGACC
TTCTTCAGAAGACTGGCTAAAGCTACTCCAATTGCATTCAACGAGGCATT
TGGAGGGCAACCCAAGTCCGATTTCAACAAATTTCGATTTCCCTTTGGAG
CAATCGCTGCTGTTGCTGGTGGAGTCTCCTATTACTGTTACTTTTCATCC
CCAAATTTGGTTCATCTAGATCAAATCAATGAAGAGACGGGTCCAAAAAT
TGCTCTCAATCCGGACAAGTGGATTGGATTTAAGTTGCAAGACACTGCAA
GGGTAAGCCACAATAGTCATTTGTTCAGGTTTTCATTTGATCCATCTGCC
AAGTTGGGTTTGGATGTTGCTTCATGCATCCTTACAAGGGCTCCATTAGG
ACAAGATGCTGAAGGAAATACAAAATATGTTGTACGGCCGTATACTCCTA
TATCAGATACAGAAGCTAAGGGACACTTTGACTTGTTAATTAAGGTTTAT
CCTGAGGGTAAAATGAGTCAGCATTTTGCTAGCTTAAAACCAGGGGATGT
AGTTGAAGTGAAAGGACCCATTGAAAAGCTCCGATACTCTCCCAATATGA
AGAAACACATCGGCATGATAGCTGGGTGGCACAGGTATACTCCTATGCTT
CAGGTAATTGAGGCTATACTGAAGATCCAGATGACACACTCAGGTGTCAC
TGCTGTATGGCATATATCCCAGATGAT
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