FC931276

Overview
NameFC931276
Unique NameFC931276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.439e-53
Identity = 99/177 (55.93%), Postives = 130/177 (73.45%), Query Frame = 3
Query:  147 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            V  RGGFSF+ C+RN  L     G+ +P  RKTGTTI GL+F+DGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+L++GGVD  GP L++++PHGS   LPF  +GSG  AA+A+ E +++
Sbjct:    6 VEHRGGFSFENCQRNASLEHVLPGLRVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQ 182          
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.141e-53
Identity = 99/177 (55.93%), Postives = 128/177 (72.32%), Query Frame = 3
Query:  147 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            V   GGFSF+ C+RN  L     G+ +P  RKTGTTI GL+F+DGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+LV+GGVD  GP L+ ++PHGS   LPF  +GSG  AA+A+ E +++
Sbjct:    6 VEPTGGFSFENCQRNASLEHVLPGLRVPHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ 182          
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.327e-53
Identity = 99/172 (57.56%), Postives = 125/172 (72.67%), Query Frame = 3
Query:  162 GFSFDLCRRNDML--AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            GFSF+ C RN  L  A  G+ +P  RKTGTTI GL+FQDGVILGADTRAT   +V DK CEKIH++AP IYCCGAG AAD E  T M +S ++LH   TGRE RV T   +L++ LF YQGYV A+L++GGVD TGP L++++PHGS   LPF  +GSG  AA+A+ E +++
Sbjct:   11 GFSFENCERNAALQRALPGLRVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQ 182          
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.730e-51
Identity = 95/171 (55.56%), Postives = 128/171 (74.85%), Query Frame = 3
Query:  162 GFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674
            G SFD  +RN+ LA+     P    TGTTIVG+ F +GV++ ADTR+T+GPIV DKNC K+H ++P I+C GAGTAADTEAVT ++ S ++LH  +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HGSTD   + ++GSGSLAAMA+ ES +K+
Sbjct:    3 GLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ 173          
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB7_ENCCU (Probable proteasome subunit beta type-7 OS=Encephalitozoon cuniculi GN=PUP1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.036e-35
Identity = 78/160 (48.75%), Postives = 103/160 (64.38%), Query Frame = 3
Query:  234 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKKPD*R*XIQLVADA 713
            KTGTTIVG+ ++ GVIL ADTR+T+GP+V DKNC KIH +   I CCGAGTAAD   V  M S +L+L +    R   V     +  +HL  Y G + AAL++GG+D  G HL+ I+PHGS ++  F ++GSGSL A+A  ES+Y+  D    I L  DA
Sbjct:    4 KTGTTIVGMKYKTGVILAADTRSTQGPVVSDKNCVKIHQITDKIMCCGAGTAADASRVARMASRELRLFQNKYLRLPLVSHFRKVCTQHLHKYGGGIGAALIVGGIDSEGCHLYEIHPHGSENSALFVSLGSGSLGAIATLESRYRAMDKDEAIDLACDA 163          
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 50/147 (34.01%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  234 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       +++Y+K
Sbjct:   16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRK 162          
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 50/147 (34.01%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  234 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674
            KTGTTI+ + F  GV+LG+D+R + G  V ++   K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       +++Y+K
Sbjct:   16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRK 162          
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19
Identity = 50/148 (33.78%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  234 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674
            + GTTI  L ++DGVIL AD+R T G  + ++  +K+  +  NI+CC +G+AADT+ V D++   L ++R   G +  V TA TL  +  +  +  + A L++ G D  TG  +++I   GS    P A  GSGS       ++ +++
Sbjct:   22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRE 169          
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 51/154 (33.12%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  213 VNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671
            +NL +    GTTI+G+ +  GV+LGAD+R + G  V ++  +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  +  L++   +N +  +Q  L++GG D   G  ++ I   G+    PFA  GSGS      F+  +K
Sbjct:    3 LNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWK 156          
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 50/146 (34.25%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674
            GTTI+G+ +  GV+LGAD+R + G  V ++  +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  A  L +   +N +  +Q  +++GG D   G  ++ I P G+    PFA  GSGS      F+  +K+
Sbjct:   13 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKE 158          
The following BLAST results are available for this feature:
BLAST of FC931276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PSB10_RAT1.439e-5355.93Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB10_MOUSE7.141e-5355.93Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB10_BOVIN9.327e-5357.56Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB7_YEAST8.730e-5155.56Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSB7_ENCCU1.036e-3548.75Probable proteasome subunit beta type-7 OS=Encepha... [more]
PSB9_SALSA1.359e-1934.01Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY2.319e-1934.01Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSB6_SCHPO8.811e-1933.78Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_ARATH2.564e-1833.12Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_TOBAC3.348e-1834.25Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]

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Properties
Property NameValue
Genbank descriptionC34103D07EF PostHarvP1 Citrus clementina cDNA clone C34103D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931276 ID=FC931276; Name=FC931276; organism=Citrus clementina; type=EST; length=722bp
TTCTTTCGTTTTAAGTTTTTAAGACTCGAAGTCGCTCGCTGTCGCTCGCT
GTCGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAGTGGGATC
AATCTCAGGTTGAAGAAAGTTTAAAATGTCAAACTCTGCAATAGATGTTC
CTTCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGATATGCTT
GCAAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGACGACCAT
TGTTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGATACCAGAG
CAACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAATTCATTAC
ATGGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTGACACAGA
GGCTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGTTATCATA
CTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAAGAAGCAC
CTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTGGTGGAGT
TGATTGCACTGGACCTCATCTTCACACAATATATCCACATGGTTCAACTG
ACACTTTGCCATTTGCGACAATGGGTTCTGGTTCTCTTGCTGCCATGGCT
ATGTTTGAATCAAAATACAAGAAGCCTGACTAAAGATGANGGATACAGCT
AGTTGCGGACGCATTTGCTCTG
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