FC931276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.439e-53 Identity = 99/177 (55.93%), Postives = 130/177 (73.45%), Query Frame = 3 Query: 147 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 V RGGFSF+ C+RN L G+ +P RKTGTTI GL+F+DGVILGADTRAT +V DK+CEKIH++AP IYCCGAG AADTE T M +S+++LH TGRE RV T +L++ LF YQG+V A+L++GGVD GP L++++PHGS LPF +GSG AA+A+ E +++ Sbjct: 6 VEHRGGFSFENCQRNASLEHVLPGLRVPLARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQ 182
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 7.141e-53 Identity = 99/177 (55.93%), Postives = 128/177 (72.32%), Query Frame = 3 Query: 147 VPSRGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 V GGFSF+ C+RN L G+ +P RKTGTTI GL+F+DGVILGADTRAT +V DK+CEKIH++AP IYCCGAG AADTE T M +S+++LH TGRE RV T +L++ LF YQG+V A+LV+GGVD GP L+ ++PHGS LPF +GSG AA+A+ E +++ Sbjct: 6 VEPTGGFSFENCQRNASLEHVLPGLRVPHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ 182
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 9.327e-53 Identity = 99/172 (57.56%), Postives = 125/172 (72.67%), Query Frame = 3 Query: 162 GFSFDLCRRNDML--AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 GFSF+ C RN L A G+ +P RKTGTTI GL+FQDGVILGADTRAT +V DK CEKIH++AP IYCCGAG AAD E T M +S ++LH TGRE RV T +L++ LF YQGYV A+L++GGVD TGP L++++PHGS LPF +GSG AA+A+ E +++ Sbjct: 11 GFSFENCERNAALQRALPGLRVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQ 182
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 8.730e-51 Identity = 95/171 (55.56%), Postives = 128/171 (74.85%), Query Frame = 3 Query: 162 GFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674 G SFD +RN+ LA+ P TGTTIVG+ F +GV++ ADTR+T+GPIV DKNC K+H ++P I+C GAGTAADTEAVT ++ S ++LH +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HGSTD + ++GSGSLAAMA+ ES +K+ Sbjct: 3 GLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ 173
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB7_ENCCU (Probable proteasome subunit beta type-7 OS=Encephalitozoon cuniculi GN=PUP1 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.036e-35 Identity = 78/160 (48.75%), Postives = 103/160 (64.38%), Query Frame = 3 Query: 234 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKKPD*R*XIQLVADA 713 KTGTTIVG+ ++ GVIL ADTR+T+GP+V DKNC KIH + I CCGAGTAAD V M S +L+L + R V + +HL Y G + AAL++GG+D G HL+ I+PHGS ++ F ++GSGSL A+A ES+Y+ D I L DA Sbjct: 4 KTGTTIVGMKYKTGVILAADTRSTQGPVVSDKNCVKIHQITDKIMCCGAGTAADASRVARMASRELRLFQNKYLRLPLVSHFRKVCTQHLHKYGGGIGAALIVGGIDSEGCHLYEIHPHGSENSALFVSLGSGSLGAIATLESRYRAMDKDEAIDLACDA 163
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19 Identity = 50/147 (34.01%), Postives = 82/147 (55.78%), Query Frame = 3 Query: 234 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674 KTGTTI+ + F GV+LG+D+R + G V ++ K+ + IYC +G+AAD + + +MV+ QL +H G + +V +A TL+K + Y+ + A L++ G D G + +G PFA GSGS +++Y+K Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRK 162
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19 Identity = 50/147 (34.01%), Postives = 82/147 (55.78%), Query Frame = 3 Query: 234 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674 KTGTTI+ + F GV+LG+D+R + G V ++ K+ + IYC +G+AAD + + +MV+ QL +H G + +V +A TL+K + Y+ + A L++ G D G + +G PFA GSGS +++Y+K Sbjct: 16 KTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRK 162
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19 Identity = 50/148 (33.78%), Postives = 83/148 (56.08%), Query Frame = 3 Query: 234 KTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674 + GTTI L ++DGVIL AD+R T G + ++ +K+ + NI+CC +G+AADT+ V D++ L ++R G + V TA TL + + + + A L++ G D TG +++I GS P A GSGS ++ +++ Sbjct: 22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRE 169
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18 Identity = 51/154 (33.12%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 213 VNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 671 +NL + GTTI+G+ + GV+LGAD+R + G V ++ +KI + N+Y C +G+AAD++ V+D V L H G+ + V + L++ +N + +Q L++GG D G ++ I G+ PFA GSGS F+ +K Sbjct: 3 LNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWK 156
BLAST of FC931276 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18 Identity = 50/146 (34.25%), Postives = 81/146 (55.48%), Query Frame = 3 Query: 240 GTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 674 GTTI+G+ + GV+LGAD+R + G V ++ +KI + N+Y C +G+AAD++ V+D V L H G+ + V A L + +N + +Q +++GG D G ++ I P G+ PFA GSGS F+ +K+ Sbjct: 13 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKE 158 The following BLAST results are available for this feature:
BLAST of FC931276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931276 ID=FC931276; Name=FC931276; organism=Citrus clementina; type=EST; length=722bpback to top |