FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_AZOPC (1-deoxy-D-xylulose-5-phosphate synthase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=dxs PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 85/221 (38.46%), Postives = 132/221 (59.73%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSG 660
            DVGIAE HA+TFAAGLA EG+ PFC +YSSF+QR YD ++HD  LQ L +   +DRAGLVG DG TH G  D+ ++ C+PN+ + AP +E +L +++ T A+  +    F      G G +         L +GKGR L EG  +A++  G++      A  +++   ISV   D  + KP+D +L+ ++   +  ++ +E+G++ GG G+ V  F+  +G
Sbjct:  371 DVGIAEGHAITFAAGLAKEGMIPFCNVYSSFMQRAYDNIIHDAVLQNLNMILCLDRAGLVGEDGVTHHGVLDLAYLRCIPNITITAPLNEKDLRNLMFT-AIQPNAKGVFVIRYPKGYGELKNWEYSFEALPVGKGRKLKEGKEIAVVSIGTIGNLARKAIRLVEKLGISVAHYDMIYLKPIDEELLHEIGKNYRCVVVIEDGTIKGGLGTAVIEFMVQNG 590          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_PSYCK (1-deoxy-D-xylulose-5-phosphate synthase OS=Psychrobacter cryohalolentis (strain K5) GN=dxs PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.281e-41
Identity = 101/227 (44.49%), Postives = 137/227 (60.35%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGA-VLPPNNKGTPLEIGKGRILMEGD---RVAILGYGSVVQQCVLAANM-----LKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSV-GGFGSHVCHFL 648
            DV IAEQHAVT A G+A++GVKP  AIYS+FLQRGYDQ++HDV LQ L V FA+DRAGLVG DG TH G FD  F+ C+PNM++ AP DE E  H++ T        +  R+PRG G GA ++ P       E     +L   D   ++A+L +G++V+    AA M     L +    + V + R+ KPLDT+L+  L  +    + T+EE  + GG GS V  +L
Sbjct:  403 DVAIAEQHAVTLAGGMATQGVKPIVAIYSTFLQRGYDQLIHDVALQNLDVMFAIDRAGLVGEDGATHAGVFDFAFLRCVPNMLIAAPKDENECYHLLNTCYEYQG-CTAVRYPRGVGTGATIIQPAQIYNIGEAVIESVLGTDDAPKKLALLAFGTMVETAQKAAEMIAKSPLLASSCQLHVVNMRWVKPLDTNLLETLVEQGVTHIATLEEHMIMGGAGSAVNEYL 628          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_THET2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.286e-41
Identity = 98/221 (44.34%), Postives = 130/221 (58.82%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGI 663
            DVGI E  AVT AAGLA  G+KP  AIYS+FLQR YDQV+HDV ++ LPV FA+DRAG+VGADG TH G FDI ++  +PN+ + AP D  EL  M+  A  +   P   R+PR N   A   P      +  GK  +L EG    IL +G  ++  + AA      D  V V +ARF KPLD +++R L + +++L   +   +GGFGS V   L   G+
Sbjct:  355 DVGICEDVAVTTAAGLALRGMKPIVAIYSTFLQRAYDQVIHDVAIENLPVVFAIDRAGIVGADGATHHGVFDIAYLRTVPNLQIAAPKDALELRAMLKKALEVGG-PVAIRYPRDNVERA---PEGVWPEIAWGKWEVLKEGTEAYILAFGKTLKYALEAA----GDDPRVGVVNARFLKPLDREMLRAL-SRYKLLTVEDHQRMGGFGSAVLEALNEMGL 566          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_DEIGD (1-deoxy-D-xylulose-5-phosphate synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.597e-41
Identity = 99/222 (44.59%), Postives = 133/222 (59.91%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGI 663
            DVGIAE  AVT AAG+A +G++P  AIYS+FLQR YDQV+HDV ++ L V FA+DR G+VGADG TH G FD++++  +PN+ +  P D AEL  M+  A      P   R+PRGN       P      L  G    L +GD V IL  G  ++  + AA  L      V V +ARF KPLD  ++R++A +   L+TVE+ + VGGFGS V   L+  G+
Sbjct:  372 DVGIAEDVAVTTAAGMALQGMRPIVAIYSTFLQRAYDQVLHDVAIENLNVTFAIDRGGIVGADGATHNGVFDLSYLRSIPNVGIGLPKDAAELRGMLKYAQE-HAGPFAIRYPRGN---VERVPEGTWPELRWGTWERLQDGDDVVILAGGKALEYALKAARDLP----GVGVVNARFVKPLDQGMLREVATKARALVTVEDNTVVGGFGSAVLEALSALGL 585          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_THEMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga maritima GN=dxs PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.310e-41
Identity = 92/221 (41.63%), Postives = 133/221 (60.18%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSG 660
            D+GI EQ  VTF A L   G+KP  AIYS+FLQR YDQ++HDV LQ  PV FA+DR+G+VG DGPTH G FDI ++  +PNM +++PS   E ++ + T     D P   R+P+ +  G V         +++G  +IL  G   AI+  G+++       N +    + VTV +A   KPLDT +++++A +H+++ITVEE   +GGFGS V   L   G
Sbjct:  345 DLGITEQTCVTFGAALGLHGMKPVVAIYSTFLQRAYDQIIHDVALQNAPVLFAIDRSGVVGEDGPTHHGLFDINYLLPVPNMKIISPSSPEEFVNSLYTVLKHLDGPVAIRYPKESFYGEVESLLENMKEIDLG-WKILKRGREAAIIATGTIL-------NEVLKIPLDVTVVNALTVKPLDTAVLKEIARDHDLIITVEEAMKIGGFGSFVAQRLQEMG 557          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_HELPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori (strain G27) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.310e-41
Identity = 87/224 (38.84%), Postives = 131/224 (58.48%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGIL 666
            DV IAEQHA+T ++ +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+ +    V  P+       +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S +  FL+   IL
Sbjct:  355 DVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGSFVLKEGVFEPSG----FVLGQSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIVAPYQKLYVFSDNYKLGGVASAILEFLSEQNIL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CAMJD (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.310e-41
Identity = 94/218 (43.12%), Postives = 131/218 (60.09%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILME-GDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSVGGFGSHVCHFL 648
            DV IAEQHAVT  A +A EG KPF AIYS+FLQR YDQV+HD  +  L V FAMDRAG+VG DG TH G FD++F++ LPN  ++AP DE ++MH +   A +   P  FR+PRG+    +L        ++ GK + L++    +A LGYG  V +       L+  + +  + D  F KPLD +L+ +LA + +I  I  E   +GG  S + +FL
Sbjct:  355 DVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMHNIMEYAYLHQGPIAFRYPRGS---FILDEEFNPCEIKFGKAQWLVKNSSEIAFLGYGQGVAKAWQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINNFL 568          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_HELPH (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori (strain HPAG1) GN=dxs PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.247e-40
Identity = 87/224 (38.84%), Postives = 130/224 (58.04%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGIL 666
            DV IAEQHA+T ++ +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+      V  P+       +G+  +L +   + ++GYG+ V +  L    LK ++I   + D RF KPLD +L   +A   ++ +  +   +GG  S +  FL+   IL
Sbjct:  355 DVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGSFALKEGVFEPSG----FVLGRSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIECALLDLRFLKPLDPNLSAIIAPYQKLYVFSDNYKLGGVASAILEFLSEQNIL 574          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_HELHP (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter hepaticus GN=dxs PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.247e-40
Identity = 91/226 (40.27%), Postives = 128/226 (56.64%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGI--GAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILD 669
            DV I E HAVT  A +A EG KPF AIYS+FLQR YDQ++HDV +  LPVRF +DRAG+VG DG TH G FDI ++  +P+MV+ AP D A L   VA A   +D P  FR+PRG+      V   N       +G+  +L  G ++ ++GYG+ V +       L ++    ++ D RF KPLD  ++ ++   H  I +  +   +GG  S +  F+    I D
Sbjct:  368 DVAICEAHAVTSMAAIAKEGFKPFVAIYSTFLQRAYDQIIHDVGILGLPVRFCIDRAGIVGEDGETHQGLFDIAYLRSIPHMVLFAPRDNASLQQAVAFAYRYNDSPCAFRYPRGSFTLEEGVFVSNE----FVLGQAEMLKRGKKILLVGYGNGVGRAYKVYQALITEGYEPSLLDLRFVKPLDKHMLNEVFKTHTHICVFSDSYYMGGVASALLEFMAEENIKD 589          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_ARCB4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Arcobacter butzleri (strain RM4018) GN=dxs PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.247e-40
Identity = 99/218 (45.41%), Postives = 131/218 (60.09%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEG-DRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGSHVCHFL 648
            DV IAEQHA+T  A +A EG KPF  IYS+FLQRG+DQ++HDV L  LPV FAMDRAG+VG DG TH GAFDI+F+  +PNMV+ AP D   L   +  A  +++ P   R+PR    GA    N   TP  +GK  IL  G      +GYG+ V + +     L ++DI  TV D RF KPLD +L+ +L+ ++ +  I  +     G GS +  FL
Sbjct:  348 DVAIAEQHAITSMAAMAKEGFKPFITIYSTFLQRGFDQIIHDVCLMNLPVVFAMDRAGIVGNDGETHQGAFDISFLRFIPNMVLFAPRDNETLEQSLEFAYNLNN-PCAIRYPR----GAFKKLNFVPTPFVLGKAEILKTGISNKLFIGYGAGVSRAI-DTEALHNEDI--TVVDLRFVKPLDKNLLLELSKKYNDWYIFSDSQKQSGVGSAILEFL 557          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_AZOPC1.473e-4138.461-deoxy-D-xylulose-5-phosphate synthase OS=Azobact... [more]
DXS_PSYCK3.281e-4144.491-deoxy-D-xylulose-5-phosphate synthase OS=Psychro... [more]
DXS_THET24.286e-4144.341-deoxy-D-xylulose-5-phosphate synthase OS=Thermus... [more]
DXS_DEIGD5.597e-4144.591-deoxy-D-xylulose-5-phosphate synthase OS=Deinoco... [more]
DXS_THEMA7.310e-4141.631-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_HELPG7.310e-4138.841-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_CAMJD7.310e-4143.121-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_HELPH1.247e-4038.841-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_HELHP1.247e-4040.271-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_ARCB41.247e-4045.411-deoxy-D-xylulose-5-phosphate synthase OS=Arcobac... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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