FC931283

Overview
NameFC931283
Unique NameFC931283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_RHOE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=dxs PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.476e-33
Identity = 83/222 (37.39%), Postives = 127/222 (57.21%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHA+T AAGLA  G+ P  AIYS+FL R +DQ++ DV L K PV   +DRAG+ G DG +H G +D++ +  +P + V AP D   L   +  A ++DD P+  RFP+G    A+         +++ K      GD V ++  G      +  A  L  Q ISV V D R+  P+   L++ +A+++ +++T+E+G + GG GS V   +  +G+
Sbjct:  362 DVGIAEQHAMTSAAGLALGGLHPVVAIYSTFLNRAFDQLLMDVALLKQPVTVVLDRAGVTGVDGASHNGVWDLSLLGIIPGIRVAAPRDADTLREELDEALLVDDGPTVVRFPKGAVPEAIPAVKRLDGMVDVLKASEGERGD-VLLVAVGPFASLALEIAERLDKQGISVAVVDPRWVLPVADSLVK-MADKYALVVTIEDGGLHGGIGSTVSAAMRAAGV 581          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CORJK (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium jeikeium (strain K411) GN=dxs PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33
Identity = 88/225 (39.11%), Postives = 131/225 (58.22%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGN---GIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            DVGIAEQHAVT AAGLA  G+ P  A+YS+FL R +DQ++ DV L KL V   +DRAG+ G+DG +H G +D++    +P + V AP D   L   +  A  +DD P+  RFP+G+   GI AV   ++     E    +   EG RV I+ +G++ +Q + AA  L   + S TV D  +  P   D + + A   ++++T+E+  V GG GS + + L+ +GI
Sbjct:  366 DVGIAEQHAVTSAAGLALGGLHPVVAVYSTFLNRAFDQLLMDVALLKLGVTLVLDRAGITGSDGASHNGMWDLSITGIVPGIHVAAPRDARTLELALDRAVAVDDAPTVVRFPKGDAPAGIPAVREEDDYDVLFEQSGDK--SEG-RVLIVSFGALSKQALGAAQALCDANFSATVVDPHWVVP-TADSLLEFARGFDLIVTIEDNGVHGGAGSRLHYDLSQAGI 586          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CHLFF (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=dxs PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 85/221 (38.46%), Postives = 118/221 (53.39%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSG 660
            DVGIAE HAVTF+AG+A       C+IYS+FL R  D V HDV LQ LPV  A+DRAGL   DG +H G +DI+F+  +PNM++  P   A ++  +  +++  + PS  R+P    I       +     + G G IL +G+ + I+G G +    +     L +  IS TV D  F KP D +L   L   H  +I +EE S+ GG  S    FL   G
Sbjct:  368 DVGIAEGHAVTFSAGIAKAKSPVICSIYSTFLHRALDNVFHDVCLQGLPVILAIDRAGLAYGDGCSHHGIYDISFLRAMPNMIICQPR-SAIVLQQLLQSSLQWNMPSAIRYPNIAAIQRDPIATDVNMHRDPGLGEILSQGEDILIIGLGHMCNTALSIKLQLLTHGISATVVDPVFIKPFDNNLFSILLMHHSKVIIIEEHSIRGGLASEFNDFLATYG 587          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CHLPN (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia pneumoniae GN=dxs PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 84/220 (38.18%), Postives = 120/220 (54.55%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR---GNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFL 648
            DVGIAE HAVTF+AG+A  G    C+IYS+FL R  D V HDV +Q LPV FA+DRAGL   DG +H G +D++F+  +P M++  P  +  +   +  +++    PS  R+P     +G      PN   +P   G    L +G+ V I+  G++    +   + L +  IS TV D  F KP D DL   L   H  +IT+EE S+ GG  S   +F+
Sbjct:  369 DVGIAEGHAVTFSAGIAKAGNPVICSIYSTFLHRALDNVFHDVCMQDLPVIFAIDRAGLAYGDGRSHHGIYDMSFLRAMPQMIICQPRSQV-VFQQLLYSSLHWSSPSAIRYPNIPAPHGDPLTGDPNFLRSP---GNAETLSQGEDVLIIALGTLCFTALSIKHQLLAYGISATVVDPIFIKPFDNDLFSLLLMSHSKVITIEEHSIRGGLASEFNNFV 584          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_CAMHC (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=dxs PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 88/227 (38.77%), Postives = 125/227 (55.07%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTP-LEIGKGRILMEGD--RVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSVGGFGSHVCHFLTLSGILD 669
            DV IAEQHAVT  A +A EG KP+  IYS+F+QR YDQV+HD+ +  L    AMDRAG+VG DG TH G FDI+F++ +PN+ + AP DE     M+   + + +     R+PRG+    +L    K  P +  GK  +L E    + A++GYG+ V +    +  L   D    + D  F KPLD + +  LA + +I  I  +    GG G  +  FL  + I D
Sbjct:  346 DVAIAEQHAVTSMAAMAKEGFKPYITIYSTFMQRAYDQVIHDLAIMNLSAVIAMDRAGIVGEDGETHEGCFDISFLNAIPNVSMCAPRDEQSFKDMI-EYSYVHEGLLAIRYPRGS---FILHEQFKDAPKISRGKSVLLRENKNAKTALIGYGNGVGRAYEVSIKL---DFETDLIDLVFAKPLDKEFLINLAKKDKIWYIFSDSVKKGGIGDILSAFLQENKIYD 565          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS1_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces coelicolor GN=dxs1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 82/215 (38.14%), Postives = 124/215 (57.67%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHV 636
            DVGIAEQHA   AAGLA+ G+ P  A+Y++FL R +DQ++ DV L +  V F +DRAG+ G DG +H G +D++ +  +P + + AP D  +L   +  A  +DD P+  RFP+   +G  +P  ++     IG   +L   DR  V ++  G +   C+ AA +L+++ I  TV D R+ KP+D  L   LA  H ++  VE+ S   G GS V
Sbjct:  362 DVGIAEQHAAVSAAGLATGGLHPVVAVYATFLNRAFDQLLMDVALHRCGVTFVLDRAGVTGVDGASHNGMWDMSVLQVVPGLRIAAPRDADQLRTQLREAVAVDDAPTLLRFPK-ESVGPAVPAVDR-----IGGLDVLHTADRSEVLLVAVGVMAPVCLGAAELLEARGIGCTVVDPRWVKPVDPAL-APLAARHRLVAVVEDNSRAAGVGSAV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_LEIXX (1-deoxy-D-xylulose-5-phosphate synthase OS=Leifsonia xyli subsp. xyli GN=dxs PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 85/224 (37.95%), Postives = 125/224 (55.80%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGI 663
            DVGIAEQHAVT AAGLA  G+ P  AIY++F+ R +DQV+ DV L K  V F +DRAG+ G DGP+H G +D+  +  +P + + AP D       +A A  + D P+  RFP+G+     +P + +          +L E D+  V ++  G +    +  A  L +Q I  TV D R+  P+   ++  LA  H I++T+E+G  VGG G+ V   L  +GI
Sbjct:  364 DVGIAEQHAVTSAAGLAFGGLHPVVAIYATFMNRAFDQVLMDVALHKAGVTFVLDRAGVTGPDGPSHHGIWDLAILQVVPGIRLAAPRDATRFREELAEAVAVADAPTVLRFPKGS-----VPADIEAVRRRDDGVDVLHESDQKDVLLVTVGPMAGLGLRVAEALAAQGIGATVVDPRWVVPVPRSVL-DLAAGHRIVVTMEDGIRVGGIGTRVRQDLREAGI 581          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_STRC1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces sp. (strain CL190) GN=dxs PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 79/215 (36.74%), Postives = 125/215 (58.14%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHV 636
            DVGIAEQHA   AAGLA+ G+ P  A+Y++FL R +DQ++ DV L +  V F +DRAG+ G DG +H G +D++ +  +P + + AP D   +   +  A  +DD P+  RFP+   +G  +P  ++     +G   +L   +R  V ++  G + Q C+  A +L+++ I  TV D R+ KP+D  ++  LA EH ++  VE+ S   G GS V
Sbjct:  362 DVGIAEQHAAVSAAGLATGGLHPVVAVYATFLNRAFDQLLMDVALHRCGVTFVLDRAGVTGVDGASHNGMWDMSVLQVVPGLRIAAPRDADHVRAQLREAVAVDDAPTLIRFPK-ESVGPRIPALDR-----VGGLDVLHRDERPEVLLVAVGVMAQVCLQTAELLRARGIGCTVVDPRWVKPVD-PVLPPLAAEHRLVAVVEDNSRAAGVGSAV 569          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS_FUSNN (1-deoxy-D-xylulose-5-phosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=dxs PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 77/222 (34.68%), Postives = 124/222 (55.86%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGI 663
            D GIAE   VT AAGLA  G KP+  IYS+F+QR   Q++HDV +Q LPVRF +DR+G+VG DG TH G +D++F   + N  V+ P+   EL   +  +   +  P   R PR     ++    N+  PLEIG+ +++ +G +   +  G++++  +   + L+++ I  T+  A   KPLD + +     E++ +  +EE  V   FG+ +  F   +GI
Sbjct:  338 DTGIAEGFTVTLAAGLAKSGKKPYVCIYSTFIQRAISQLIHDVSIQNLPVRFIIDRSGIVGEDGKTHNGIYDLSFFLSIQNFTVLCPTTAKELGQALEISKNFNLGPLVIRIPR----DSIFDIENE-EPLEIGRWKVIKKGSKNLFIATGTMLKIILEIYDKLQNRGIYCTIISAASVKPLDENYLLNYIKEYDNIFVLEENYVKNSFGTAILEFFNDNGI 554          
BLAST of FC931283 vs. ExPASy Swiss-Prot
Match: DXS1_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces avermitilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 78/213 (36.62%), Postives = 123/213 (57.75%), Query Frame = 1
Query:    1 DVGIAEQHAVTFAAGLASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHV 636
            DVGIAEQHA   AAGLA+ G+ P  A+Y++FL R +DQ++ DV L +  V F +DRAG+ G DG +H G +D++ +  +P + + AP D  +L   +  A  +DD P+  RFP+   +G  +P  +    +++       E  +V ++  G +   C+ AA +L+++ I  TV D R+ KP+D  L   LA EH ++  VE+ S   G G+ V
Sbjct:  362 DVGIAEQHAAVSAAGLATGGLHPVVAVYATFLNRAFDQLLMDVALHRCGVTFVLDRAGVTGVDGASHNGMWDMSILQVVPGLRIAAPRDADQLRAQLREAVAVDDAPTLLRFPK-ESVGPAIPAVDHVGGMDV--LHRFPESPQVLLVAVGVMAPVCLQAAELLEARGIGCTVVDPRWVKPVDPSL-PGLAAEHRLVAVVEDNSRAAGVGAAV 570          
The following BLAST results are available for this feature:
BLAST of FC931283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_RHOE41.476e-3337.391-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]
DXS_CORJK1.928e-3339.111-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS_CHLFF3.289e-3338.461-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLPN4.296e-3338.181-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CAMHC4.296e-3338.771-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS1_STRCO4.296e-3338.141-deoxy-D-xylulose-5-phosphate synthase 1 OS=Strep... [more]
DXS_LEIXX5.610e-3337.951-deoxy-D-xylulose-5-phosphate synthase OS=Leifson... [more]
DXS_STRC17.327e-3336.741-deoxy-D-xylulose-5-phosphate synthase OS=Strepto... [more]
DXS_FUSNN7.327e-3334.681-deoxy-D-xylulose-5-phosphate synthase OS=Fusobac... [more]
DXS1_STRAW7.327e-3336.621-deoxy-D-xylulose-5-phosphate synthase 1 OS=Strep... [more]

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Properties
Property NameValue
Genbank descriptionC34103E02EF PostHarvP1 Citrus clementina cDNA clone C34103E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931283 ID=FC931283; Name=FC931283; organism=Citrus clementina; type=EST; length=677bp
GATGTGGGGATTGCTGAGCAACATGCTGTTACTTTTGCAGCTGGTTTAGC
CTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCTGCAAA
GAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTACCAGTC
CGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCTACTCA
TTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACATGGTGG
TCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACAGCA
GCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGG
AATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGAGATTG
GGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTAT
GGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCA
AGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATA
CAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTG
GAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAAC
CTTAAGTGGCATTCTGGATGGACCTCT
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