FC931287

Overview
NameFC931287
Unique NameFC931287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931287 vs. ExPASy Swiss-Prot
Match: PCY1B_RAT (Choline-phosphate cytidylyltransferase B OS=Rattus norvegicus GN=Pcyt1b PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  279 VYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII 683
            VY DG FDLFH+GH   L +A+ L    +LLVG+ +D +  + +G    +M+  ER  ++  CRYVDEVI  APW +T + +    I  V H  +  ++    G  D Y+  K  G+F   +  + I+T+ +  RI+
Sbjct:   79 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKG--FTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSS---AGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIV 210          
BLAST of FC931287 vs. ExPASy Swiss-Prot
Match: PCY1B_MOUSE (Choline-phosphate cytidylyltransferase B OS=Mus musculus GN=Pcyt1b PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  279 VYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII 683
            VY DG FDLFH+GH   L +A+ L    +LLVG+ +D +  + +G    +M+  ER  ++  CRYVDEVI  APW +T + +    I  V H  +  ++    G  D Y+  K  G+F   +  + I+T+ +  RI+
Sbjct:   79 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKG--FTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSS---AGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIV 210          
BLAST of FC931287 vs. ExPASy Swiss-Prot
Match: PCY1B_HUMAN (Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  279 VYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII 683
            VY DG FDLFH+GH   L +A+ L    +LLVG+ +D +  + +G    +M+  ER  ++  CRYVDEVI  APW +T + +    I  V H  +  ++    G  D Y+  K  G+F   +  + I+T+ +  RI+
Sbjct:   79 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKG--FTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSS---AGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIV 210          
BLAST of FC931287 vs. ExPASy Swiss-Prot
Match: ECT1_SCHPO (Probable ethanolamine-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe GN=SPAC15E1.05c PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 43/136 (31.62%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  279 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIA 686
            +++DG  D FH GH   + +A+QLG+ L++GI++D+ ++ ++G   P+M L ER LS   C++VDEV+  AP+    + +  +    VVHG   + +T   G  D Y  AK+   +  ++  + ++TT +  R+++
Sbjct:   11 LWLDGCMDFFHYGHSNAILQAKQLGETLVIGIHSDEEITLNKGP--PVMTLEERCLSANTCKWVDEVVPSAPYVFDLEWMRRYGCQYVVHG--DDISTDANG-DDCYRFAKAADQYLEVKRTEGVSTTELLDRLLS 141          

HSP 2 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 49/172 (28.49%), Postives = 86/172 (50.00%), Query Frame = 3
Query:    6 DGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNDASLPRDPLRAIQSKDAHLSQFLPT-------SRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP 494
            +G D Y  AK   +Y ++KRTEGVS+T+++ R+LSS+         +  S   D LR   +    L+ F             ++  +      P   ++YIDG +DLF   H+  L+   ++  G  ++ GI+ D+   E      P+++L ER L++L C+Y+  +++G P
Sbjct:  107 NGDDCYRFAKAADQYLEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPFTDVFIYNTEKPETLISGTTLLRLNPEKNIIYIDGDWDLFTEKHISALELCTRMFPGIPIMAGIFADEKCFE-----KPMLNLLERILNLLQCKYISSILVGPP 273          
BLAST of FC931287 vs. ExPASy Swiss-Prot
Match: PCY1_YEAST (Choline-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae GN=PCT1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 61/228 (26.75%), Postives = 105/228 (46.05%), Query Frame = 3
Query:   27 LAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNDASL-PRDPLRA---IQSKDAHLSQFLPTSRRIVQ---FSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII 683
            L KK    +Q + TE   + D         +++K  +++ D  L PR   R     + K+A  +  LP   R  +   F     P      +Y DG FDLFH GH++ L++ ++      L+VG+ +D+I  + +G    ++   +R  ++  CR+VDEV+  APW VT + +    I  V H  +   +       D Y+  K MG F   +    ++T+ +  +II
Sbjct:   23 LFKKNKNKRQREETEEQDNED--------KDESKNQDENKDTQLTPRKRRRLTKEFEEKEARYTNELPKELRKYRPKGFRFNLPPTDRPIRIYADGVFDLFHLGHMKQLEQCKKAFPNVTLIVGVPSDKITHKLKGL--TVLTDKQRCETLTHCRWVDEVVPNAPWCVTPEFLLEHKIDYVAHDDIPYVS---ADSDDIYKPIKEMGKFLTTQRTNGVSTSDIITKII 237          
BLAST of FC931287 vs. ExPASy Swiss-Prot
Match: PCY1_SCHPO (Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe GN=SPCC1827.02c PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  279 VYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII 683
            VY DG FDLFH GH+  L++A+++     L+VG+  DQ+   HR     +M+  ER+ ++  C++VDEV+  APW +T + +    I  V H  +   +       D Y   K +G F   +  + ++T+ +  RII
Sbjct:  104 VYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLT--HRLKGLTVMNDKERAEALRHCKWVDEVLENAPWVITPEFLEEHKIDFVAHDDIPYAS---DDSGDIYLPVKKVGKFIPTKRTEGVSTSDLITRII 235          
BLAST of FC931287 vs. ExPASy Swiss-Prot
Match: PCY1_CAEEL (Putative choline-phosphate cytidylyltransferase OS=Caenorhabditis elegans GN=F08C6.2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 42/137 (30.66%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  279 VYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII 683
            +Y DG +DLFH GH   L++ +++    +L+VG+  D+   +++G    +    ER   V  CRYVDEV   APW  T + +    +  + H  +        G+ D YE  +  G+F   E  + ++T+ V  RII
Sbjct:   83 IYADGIYDLFHHGHANQLRQVKKMFPNVYLIVGVCGDRDTHKYKG--RTVTSEEERYDGVRHCRYVDEVYREAPWFCTVEFLKNLKVDFIAHDAIPYV---APGEEDLYEKFRREGMFLETERTEGVSTSDVVCRII 214          
BLAST of FC931287 vs. ExPASy Swiss-Prot
Match: TAGD_BACSU (Glycerol-3-phosphate cytidylyltransferase OS=Bacillus subtilis GN=tagD PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  291 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 551
            G FDL H GH+++L++A+QLGD+L+V I TD+  + + + +YH   H   R L +   RYVDEVI    WE  K  I   NI + V G
Sbjct:    8 GTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEH---RKLILETIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMG 92          
The following BLAST results are available for this feature:
BLAST of FC931287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PCY1B_RAT2.276e-1635.04Choline-phosphate cytidylyltransferase B OS=Rattus... [more]
PCY1B_MOUSE2.276e-1635.04Choline-phosphate cytidylyltransferase B OS=Mus mu... [more]
PCY1B_HUMAN2.276e-1635.04Choline-phosphate cytidylyltransferase B OS=Homo s... [more]
ECT1_SCHPO1.927e-1531.62Probable ethanolamine-phosphate cytidylyltransfera... [more]
PCY1_YEAST1.994e-1226.75Choline-phosphate cytidylyltransferase OS=Saccharo... [more]
PCY1_SCHPO1.994e-1232.12Probable choline-phosphate cytidylyltransferase OS... [more]
PCY1_CAEEL1.994e-1230.66Putative choline-phosphate cytidylyltransferase OS... [more]
TAGD_BACSU3.760e-1143.18Glycerol-3-phosphate cytidylyltransferase OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionC34103E06EF PostHarvP1 Citrus clementina cDNA clone C34103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931287 ID=FC931287; Name=FC931287; organism=Citrus clementina; type=EST; length=700bp
TTCCAGATGGAACTGATGCTTATGCCTTGGCAAAGAAAGTTGGCCGTTAC
AAGCAGATTAAGCGCACAGAAGGTGTCTCCAGCACAGATATTGTAGGGAG
GATACTTTCGTCAATGGAGGATACAAAAGCTTGTGAAGATCATAATGATG
CATCCTTGCCAAGAGATCCTCTTAGAGCAATTCAATCTAAGGATGCCCAT
TTATCTCAATTTCTACCAACATCACGAAGGATTGTGCAGTTTTCAAATTG
CAAGGGACCTGGTCCAAATGCTCGTGTTGTGTACATTGATGGGGCATTTG
ATCTCTTCCATGCAGGACATGTTGAGATTCTCAAGAAGGCTAGGCAGCTT
GGAGACTTTCTTTTAGTTGGCATTTACACTGACCAGATAGTGAGTGAGCA
CAGAGGGAGCTACCACCCAATTATGCATCTACATGAGCGTAGTCTTAGTG
TGTTGGCATGTCGTTATGTTGATGAAGTCATAATTGGTGCACCTTGGGAG
GTTACTAAGGACATGATAACCACTTTCAACATCTGTTTGGTTGTGCATGG
GACAGTTTCAGAGACCAACACTCCATTGACTGGTCAAAGCGATCCTTATG
AAGTTGCCAAAAGCATGGGAATTTTCCAGTTACTTGAAAGTCCTAAAAGT
ATAACCACCACATCAGTGGCCCAAAGGATAATTGCCNAATCACGAGCCTA
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