FC931292

Overview
NameFC931292
Unique NameFC931292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_SHELP (S-adenosylmethionine synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=metK PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.171e-55
Identity = 108/223 (48.43%), Postives = 154/223 (69.06%), Query Frame = 2
Query:   17 TDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD 685
            ++VRK+ T PWLRPD K+QVT  Y +       V +  V++STQH ++V+  ++   + + +IKPV+P ++L+ +T F +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GTGK+ ++ ++ +V+++FD RP  ++  LDL R     +  TAAYGHFGR++
Sbjct:  150 SEVRKDNTLPWLRPDAKSQVTFAYEDNK----IVGIDAVVLSTQHCDSVSQSDLIEGVMETIIKPVLPAQWLNKETKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIGLVRQHFDLRPYGLTEMLDLAR---PIYKATAAYGHFGRNE 365          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_RALPJ (S-adenosylmethionine synthetase OS=Ralstonia pickettii (strain 12J) GN=metK PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.171e-55
Identity = 114/225 (50.67%), Postives = 152/225 (67.56%), Query Frame = 2
Query:   17 TDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            + +R++G  PWLRPD K+QVTV Y +      P  V TV++STQH   ++ + I   + + +IKPV+P   L + T + +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK++VA+GLAR+C VQVSYAIGV  P+++ V + GTG IPD++I K+V+E+FD RP  I   LDL R     + KTAAYGHFGR++P+
Sbjct:  153 SQLRRDGRLPWLRPDAKSQVTVRYVDGK----PHSVDTVVLSTQHAPEMSQEAIREAVIEEIIKPVLPSHMLAE-TKYLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVARPINITVYTEGTGVIPDEQIAKLVQEHFDLRPKGIVQMLDLLR---PVYEKTAAYGHFGREEPE 369          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_KLEP3 (S-adenosylmethionine synthetase OS=Klebsiella pneumoniae (strain 342) GN=metK PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.171e-55
Identity = 110/221 (49.77%), Postives = 150/221 (67.87%), Query Frame = 2
Query:   20 DVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRD 682
            +VRKNGT PWLRPD K+QVT +Y  ++G +V +    V++STQH E +    +   + + +IKP +P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+
Sbjct:  151 EVRKNGTLPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHAEDIDQKSLQEAVMEEIIKPTLPTEWLNASTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE 364          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_ENT38 (S-adenosylmethionine synthetase OS=Enterobacter sp. (strain 638) GN=metK PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.171e-55
Identity = 110/221 (49.77%), Postives = 151/221 (68.33%), Query Frame = 2
Query:   20 DVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRD 682
            +VRKNG+ PWLRPD K+QVT +Y  ++G +V +    V++STQH E +    +   + + +IKPV+P ++L+  T F +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+
Sbjct:  151 EVRKNGSLPWLRPDAKSQVTFQY--DDGKIVGI--DAVVLSTQHSEDIDQKSLQEAVMEEIIKPVLPTEWLNASTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKLPTEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE 364          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_BUCAP (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metK PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.171e-55
Identity = 109/225 (48.44%), Postives = 151/225 (67.11%), Query Frame = 2
Query:   11 KLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD 685
            K +++RK     WLRPD K+QVT +Y  +NG ++ +   TV+ STQH E++T D +   + + +IKPV+P+K+L   T F +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK+IVA+GLA RC +Q+SYAIG+ EP S+ ++++ TGKI +K ++ +V+  FD RP  +   LDL R     +L TA YGHFGR++
Sbjct:  148 KQSELRKKNILHWLRPDAKSQVTFKY--KNGRIIGI--DTVVFSTQHKESITQDVLKEAVMEEIIKPVLPNKWLTKNTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMSRHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGIAEPTSIMIETFRTGKISNKSLINLVRNIFDLRPYGLIEMLDLLR---PIYLNTAVYGHFGREE 365          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_TREDE (S-adenosylmethionine synthetase OS=Treponema denticola GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.448e-55
Identity = 114/222 (51.35%), Postives = 148/222 (66.67%), Query Frame = 2
Query:   23 VRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVI-PDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD 685
            +RK    PWLRPD KTQ+TV+Y        P+++ TV++S QH   V  DE+   L   VIKPV+ P   L D T + +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY+ R  AK++VA+ LARRC VQ++YAIGVP P++V VD++GTG++P+++I K +KE FD  P  I   LDLKR     + +TAAYGHFGR +
Sbjct:  158 LRKEKVIPWLRPDSKTQITVKYEG----FKPIKIDTVVLSHQHYPDVQYDELKDTLINRVIKPVLGPTGLLADDTKYFINPTGRFVIGGPFGDTGLTGRKIIVDTYGGMGRHGGGAFSGKDPSKVDRSAAYMARYIAKNVVAADLARRCEVQLAYAIGVPFPVAVRVDTFGTGEVPEEKIEKAIKEVFDMSPAGIIKTLDLKR---PIYKETAAYGHFGRPE 372          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_SYNE7 (S-adenosylmethionine synthetase OS=Synechococcus elongatus (strain PCC 7942) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.448e-55
Identity = 121/244 (49.59%), Postives = 158/244 (64.75%), Query Frame = 2
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKQHVIKPVIPDKYL--DDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKR---GGNGRFL-KTAAYGHFGRDDPD 691
            L  +L  VR NG   +LRPDGKTQVT+ Y  E+G   PV + T+LISTQH        D+    + I +DL + V+ PV  D  +  D  T F +NP+G+FVIGGP GDAGLTGRKII+DTY             KDPTKVDRS AY  R  AK+IVA+GLA +C VQ+SYAIGV  P+SV V+++GTGK+ D+ +L +V+++F+ RP  I  + +L+R      GRF  + AAYGHFGR+D D
Sbjct:  156 LARQLAVVRHNGQLDYLRPDGKTQVTIAY--EDGK--PVAIDTILISTQHKAAIGDISDDNAVQERIKSDLWEQVVLPVFSDLVIQPDSATRFLVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLAEKCEVQLSYAIGVARPVSVLVETFGTGKVADEVLLDLVRKHFELRPAGIIEHFNLQRLPGERGGRFYQEVAAYGHFGRNDLD 395          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_SULNB (S-adenosylmethionine synthetase OS=Sulfurovum sp. (strain NBC37-1) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.448e-55
Identity = 113/226 (50.00%), Postives = 153/226 (67.70%), Query Frame = 2
Query:   11 KLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTI-FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD 685
            KL  VRKNGT P+LRPDGK QV+V+Y +      PV V T+++STQH ETV+ +++   +K+ VI PV+    +D   I +H+NP+GRFVIGGP GDAGLTGRKII+DTY             KDPTKVDRS AY  R  AK++VA+G   +  +QV+YAIGV +P+S++VD++GT  I +++I+  V+  FD  P  I  +LDL +     + KTAAYGHFGR+D
Sbjct:  148 KLAAVRKNGTVPFLRPDGKAQVSVKYVDGK----PVAVDTIVVSTQHHETVSLEQVQKAVKEEVIDPVLATYDIDISDITYHINPTGRFVIGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPTKVDRSAAYAARYVAKNLVAAGACDKATLQVAYAIGVAKPVSIYVDTHGTAHIDEEKIVSCVESLFDLTPKGIIDSLDLLK---PIYKKTAAYGHFGRED 366          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_SULDN (S-adenosylmethionine synthetase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.448e-55
Identity = 108/228 (47.37%), Postives = 151/228 (66.23%), Query Frame = 2
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD 685
            L  +L +VRK G  P+LRPDGK Q++V+Y  +     PV V  V++STQH   V+ ++I  D+ + VI+ VIP + + +KT+FH+NP+G+FVIGGP GDAGLTGRKII+DTY             KDPTKVDRS AY  R  AK++VA+G+  R  +Q++YAIG+  P+S+ +D++ T  + +K+I   VKE FD  P  I  +LDL R     + KTA YGHFGR++
Sbjct:  151 LTRRLAEVRKEGIIPYLRPDGKAQISVKYIGDK----PVSVEAVVVSTQHAPEVSQEKIREDVIRDVIRAVIPAELMSEKTLFHINPTGKFVIGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPTKVDRSAAYACRHVAKNLVAAGVCDRVTIQIAYAIGISAPVSIMIDTHNTAIVEEKKIESCVKELFDLTPKGIIKSLDLLR---PIYRKTAVYGHFGREE 371          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_PSE14 (S-adenosylmethionine synthetase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=metK PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.448e-55
Identity = 110/220 (50.00%), Postives = 149/220 (67.73%), Query Frame = 2
Query:   20 DVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGR 679
            + RK+G  PWLRPD K+QVT  Y  ENG +V V    +++STQH+  V+  ++   + + ++K VIP   L   T FH+NP+G F+IGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV +P+S+ ++++GTGK+ D +I+K+V++NFD RP  I+  LDL    +  +  TAAYGHFGR
Sbjct:  152 EARKSGLLPWLRPDAKSQVTCRY--ENGKVVGV--DAIVLSTQHNPDVSYKDLREGVMELIVKHVIPAHLLHKDTQFHINPTGNFIIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPMSISLNTFGTGKLSDDKIIKLVRDNFDLRPYAITTMLDLL---HPMYQATAAYGHFGR 364          
The following BLAST results are available for this feature:
BLAST of FC931292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHELP4.171e-5548.43S-adenosylmethionine synthetase OS=Shewanella loih... [more]
METK_RALPJ4.171e-5550.67S-adenosylmethionine synthetase OS=Ralstonia picke... [more]
METK_KLEP34.171e-5549.77S-adenosylmethionine synthetase OS=Klebsiella pneu... [more]
METK_ENT384.171e-5549.77S-adenosylmethionine synthetase OS=Enterobacter sp... [more]
METK_BUCAP4.171e-5548.44S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_TREDE5.448e-5551.35S-adenosylmethionine synthetase OS=Treponema denti... [more]
METK_SYNE75.448e-5549.59S-adenosylmethionine synthetase OS=Synechococcus e... [more]
METK_SULNB5.448e-5550.00S-adenosylmethionine synthetase OS=Sulfurovum sp. ... [more]
METK_SULDN5.448e-5547.37S-adenosylmethionine synthetase OS=Sulfurimonas de... [more]
METK_PSE145.448e-5550.00S-adenosylmethionine synthetase OS=Pseudomonas syr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103E11EF PostHarvP1 Citrus clementina cDNA clone C34103E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931292 ID=FC931292; Name=FC931292; organism=Citrus clementina; type=EST; length=691bp
GCTTGGTGCTAAGCTTACAGACGTGAGGAAGAATGGGACCTGTCCGTGGC
TGAGGCCAGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAAT
GGCGCCATGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCA
CGATGAGACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATG
TGATCAAGCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTC
CATCTTAACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGC
TGGGCTCACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGGGGG
CACACGGTGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGA
AGCGGTGCTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGG
GCTTGCCAGGAGATGCATTGTTCAGGTTTCTTACGCTATTGGTGTGCCCG
AGCCTTTGTCAGTTTTTGTTGATAGTTATGGGACTGGGAAGATCCCTGAC
AAGGAAATTTTGAAGATTGTGAAGGAGAATTTTGATTTTAGGCCTGGGAT
GATTTCTATTAATCTTGATCTCAAGAGGGGTGGCAACGGCAGGTTCTTGA
AGACTGCCGCTTATGGGCACTTTGGCAGAGATGATCCTGAT
back to top