FC931292

Overview
NameFC931292
Unique NameFC931292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15265 contig Ccv1_Contig15265:642..1332. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_HAEDU (S-adenosylmethionine synthetase OS=Haemophilus ducreyi GN=metK PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.866e-54
Identity = 106/221 (47.96%), Postives = 146/221 (66.06%), Query Frame = 2
Query:   20 DVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRD 682
            +VRK+G   WLRPD K+Q+T  Y N       + +  V++STQH E V   E+   + + +IKP +P K+L+  T + +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AKSIVA+GLA RC +Q+SYAIGV +P S+ V+++GTGK+ +  ++K++ +NFD RP  +   LDL +     + +TAAYGHFGR+
Sbjct:  156 EVRKSGKLAWLRPDAKSQLTFAYENNQ----IIGIDAVVLSTQHAEEVKQKELIEGVMEEIIKPTLPSKWLNQHTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKSIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNDTLVKLIYQNFDLRPYGLIKMLDLIQ---PIYRETAAYGHFGRE 369          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_XANCP (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris GN=metK PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.027e-53
Identity = 110/222 (49.55%), Postives = 147/222 (66.22%), Query Frame = 2
Query:   26 RKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            +KN    WLRPD K+QVT+ Y  E+G  V   +  V++ST HD  V   ++   +++ ++KPV+P K+L   T FH+NP+G+FVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK++VA+GLA RC VQVSYAIGV EP S+ V ++GTGKI D+ I K+++++FD RP  I   LDL    +  + +TA+YGHFGR   D
Sbjct:  155 KKNSALSWLRPDAKSQVTLRY--EDG--VATAIDAVVLSTHHDPGVKQKDLIEAVREEILKPVLPAKWLHKGTKFHINPTGKFVIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKIADELIEKLIRKHFDLRPFGIIQMLDLI---HPMYQQTASYGHFGRKPKD 369          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_VIBCM (S-adenosylmethionine synthetase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=metK PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.027e-53
Identity = 105/222 (47.30%), Postives = 153/222 (68.92%), Query Frame = 2
Query:   20 DVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD 685
            +VRKNGT PWLRPD K+QVT +Y  + G +V +    V++STQH ++++  ++   + + +IKPV+P ++L  +T + +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK+IVA+G+A RC +Q+SYAIGV +P S+ V+++GT K+  + I++ V++ FD RP  +   L+L +     + KTAAYGHFGR++
Sbjct:  152 EVRKNGTLPWLRPDAKSQVTFQY--DQGKIVGI--DAVVLSTQHSDSISTADLREAVMEEIIKPVLPAEWLSKETKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRCEIQLSYAIGVADPTSIMVETFGTEKVSQEIIIEAVRQFFDLRPYGLQEMLNLLQ---PIYKKTAAYGHFGREE 366          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_VIBC3 (S-adenosylmethionine synthetase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=metK PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.027e-53
Identity = 105/222 (47.30%), Postives = 153/222 (68.92%), Query Frame = 2
Query:   20 DVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD 685
            +VRKNGT PWLRPD K+QVT +Y  + G +V +    V++STQH ++++  ++   + + +IKPV+P ++L  +T + +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK+IVA+G+A RC +Q+SYAIGV +P S+ V+++GT K+  + I++ V++ FD RP  +   L+L +     + KTAAYGHFGR++
Sbjct:  152 EVRKNGTLPWLRPDAKSQVTFQY--DQGKIVGI--DAVVLSTQHSDSISTADLREAVMEEIIKPVLPAEWLSKETKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGMADRCEIQLSYAIGVADPTSIMVETFGTEKVSQEIIIEAVRQFFDLRPYGLQEMLNLLQ---PIYKKTAAYGHFGREE 366          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_RICAH (S-adenosylmethionine synthetase OS=Rickettsia akari (strain Hartford) GN=metK PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.027e-53
Identity = 101/223 (45.29%), Postives = 146/223 (65.47%), Query Frame = 2
Query:   23 VRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            +RK    PWLRPD K+QVT+ Y N      PV +  V++STQH   +   ++   + + +IKP +P  +L+  T + +NP+GRFVIGGP  D GLTGRKII+D+Y             KDPTK+DRS AY+ R  AK++V +GLA RC +Q+SYAIGV  P+SV+ +++GT K+ +++I K++ ++FD RPG I  +L L+      + KTA+YGHFGR+D D
Sbjct:  152 LRKQNVLPWLRPDAKSQVTLRYENNK----PVAIDAVVLSTQHHPEIQQKDLIEAVIEEIIKPTLPSSWLNKDTKYLINPTGRFVIGGPVADCGLTGRKIIVDSYGGMARHGGGCFSGKDPTKIDRSAAYMARYIAKNVVGAGLADRCEIQISYAIGVAAPVSVYTETFGTSKLSNEQITKLITQHFDMRPGKIIKHLALR---TPCYQKTASYGHFGREDAD 367          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_PSEPF (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain Pf0-1) GN=metK PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.027e-53
Identity = 108/220 (49.09%), Postives = 150/220 (68.18%), Query Frame = 2
Query:   20 DVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGR 679
            + RK+G  PWLRPD K+QVT  Y  E G +V +    V++STQH+  V+ +++   + + ++K V+P + L   T FH+NP+G+F+IGGP GD GLTGRKII+D+Y             KDP+KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++++GTGKI D +I+K+V+E FD RP  I+  LDL    +  + +TAAYGHFGR
Sbjct:  152 EARKSGLLPWLRPDAKSQVTCRY--EGGKVVGI--DAVVLSTQHNPEVSYNDLREGVMELIVKHVLPAELLSKDTQFHINPTGQFIIGGPVGDCGLTGRKIIVDSYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKISDDKIIKLVREVFDLRPYAITTMLDLL---HPMYQETAAYGHFGR 364          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_BURXL (S-adenosylmethionine synthetase OS=Burkholderia xenovorans (strain LB400) GN=metK PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.027e-53
Identity = 109/224 (48.66%), Postives = 147/224 (65.62%), Query Frame = 2
Query:   20 DVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            ++R++G  PWLRPD K+QVTV Y +      P  + TV++STQH   +    +   + + VIKP +P   +     F +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK+IVA+GLA RC++QVSYAIGV +P SV V+++GTG++ D  I ++V+E+FD RP  I   LDL R     + K+AAYGHFGR++P+
Sbjct:  154 NLRRDGRLPWLRPDAKSQVTVRYVDGK----PHSIDTVVLSTQHSPDIDLGTLREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRCLIQVSYAIGVAQPTSVMVNTFGTGRVSDAVITRLVQEHFDLRPKGIIQMLDLLR---PIYEKSAAYGHFGREEPE 370          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_STRFR (S-adenosylmethionine synthetase OS=Streptomyces fradiae GN=metK PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.342e-53
Identity = 117/237 (49.37%), Postives = 156/237 (65.82%), Query Frame = 2
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAA-DLKQHVIKPVIPDKYLD----DKTIFHL--NPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            L  +L++VRKNGT P+LRPDGKTQVT+EY  +      VR+ TV++S+QH   +  D + A D+++HV++PV+     D    D   + L  NP+GRF IGGP GDAGLTGRKIIIDTY             KDP+KVDRS AY +R  AK++VA+GLA RC VQV+YAIG  EP+ +FV+++GT  +  + I + + E FD RP  I  +LDL R     + KTAAYGHFGR+ P+
Sbjct:  160 LSRRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVVSSQHASGIDLDSLLAPDIRRHVVEPVLAGLAEDGIKLDTAGYRLLVNPTGRFEIGGPMGDAGLTGRKIIIDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLASRCEVQVAYAIGKAEPVGLFVETFGTATVDVERIEQAIGEVFDLRPAAIIRDLDLLR---PIYAKTAAYGHFGRELPE 389          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_STRCO (S-adenosylmethionine synthetase OS=Streptomyces coelicolor GN=metK PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.342e-53
Identity = 117/237 (49.37%), Postives = 156/237 (65.82%), Query Frame = 2
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAA-DLKQHVIKP----VIPDKYLDDKTIFHL--NPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            L  +L++VRKNGT P+LRPDGKTQVT+EY  +      VR+ TV++S+QH   +  + + A D+K+ V++P    ++ D    D   + L  NP+GRF IGGP GDAGLTGRKIIIDTY             KDP+KVDRS AY +R  AK++VA+GLA RC VQV+YAIG  EP+ +FV+++GT K+  ++I K + E FD RP  I   LDL R     + +TAAYGHFGR+ PD
Sbjct:  155 LSKRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVVSSQHASDIDLESLLAPDIKEFVVEPELKALLEDGIKIDTENYRLLVNPTGRFEIGGPMGDAGLTGRKIIIDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAARCEVQVAYAIGKAEPVGLFVETFGTAKVDTEKIEKAIDEVFDLRPAAIIRALDLLR---PIYAQTAAYGHFGRELPD 384          
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_SHESH (S-adenosylmethionine synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=metK PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.342e-53
Identity = 105/223 (47.09%), Postives = 152/223 (68.16%), Query Frame = 2
Query:   17 TDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD 685
            ++VRK  T PWLRPD K+QVT  Y +       V +  +++STQH ++V+  ++   + + +IKPV+P ++L+  T + +NP+GRFVIGGP GD GLTGRKII+DTY             KDP+KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++++GTGK+ ++ ++ +V+++FD RP  ++  LDL R     +  TAAYGHFGR++
Sbjct:  150 SEVRKAKTLPWLRPDAKSQVTFAYEDHK----IVGIDAIVLSTQHCDSVSQADLIEGVMETIIKPVLPAQWLNKDTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCELQVSYAIGVAEPTSISIETFGTGKVSEEALIALVRQHFDLRPYGLTEMLDLAR---PIYQSTAAYGHFGRNE 365          
The following BLAST results are available for this feature:
BLAST of FC931292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_HAEDU7.866e-5447.96S-adenosylmethionine synthetase OS=Haemophilus duc... [more]
METK_XANCP1.027e-5349.55S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_VIBCM1.027e-5347.30S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]
METK_VIBC31.027e-5347.30S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]
METK_RICAH1.027e-5345.29S-adenosylmethionine synthetase OS=Rickettsia akar... [more]
METK_PSEPF1.027e-5349.09S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_BURXL1.027e-5348.66S-adenosylmethionine synthetase OS=Burkholderia xe... [more]
METK_STRFR1.342e-5349.37S-adenosylmethionine synthetase OS=Streptomyces fr... [more]
METK_STRCO1.342e-5349.37S-adenosylmethionine synthetase OS=Streptomyces co... [more]
METK_SHESH1.342e-5347.09S-adenosylmethionine synthetase OS=Shewanella sedi... [more]

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Properties
Property NameValue
Genbank descriptionC34103E11EF PostHarvP1 Citrus clementina cDNA clone C34103E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931292 ID=FC931292; Name=FC931292; organism=Citrus clementina; type=EST; length=691bp
GCTTGGTGCTAAGCTTACAGACGTGAGGAAGAATGGGACCTGTCCGTGGC
TGAGGCCAGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAAT
GGCGCCATGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCA
CGATGAGACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATG
TGATCAAGCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTC
CATCTTAACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGC
TGGGCTCACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGGGGG
CACACGGTGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGA
AGCGGTGCTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGG
GCTTGCCAGGAGATGCATTGTTCAGGTTTCTTACGCTATTGGTGTGCCCG
AGCCTTTGTCAGTTTTTGTTGATAGTTATGGGACTGGGAAGATCCCTGAC
AAGGAAATTTTGAAGATTGTGAAGGAGAATTTTGATTTTAGGCCTGGGAT
GATTTCTATTAATCTTGATCTCAAGAGGGGTGGCAACGGCAGGTTCTTGA
AGACTGCCGCTTATGGGCACTTTGGCAGAGATGATCCTGAT
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