FC931292

Overview
NameFC931292
Unique NameFC931292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15265 contig Ccv1_Contig15265:642..1332. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 3.712e-112
Identity = 196/230 (85.22%), Postives = 210/230 (91.30%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGA+LT+VRKNG C WLRPDGKTQVTVEY N+NGAMVP+RVHTVLISTQHDETVTNDEIAADLK+HVIKPVIP++YLD+KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYI RQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EIL+IV ENFDFRPGMI INLDL RGGNGR+LKTAAYGHFGR+DPD
Sbjct:  151 LGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNGRYLKTAAYGHFGREDPD 380
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK3_PICSI (S-adenosylmethionine synthetase 3 OS=Picea sitchensis GN=METK3 PE=2 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 4.848e-112
Identity = 196/230 (85.22%), Postives = 209/230 (90.87%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGAKLT+VRKNGTC WLRPDGKTQVT+EY N+ GAMVP RVHTVLISTQHDETVTND+IAADLKQHVIKPVIP+KYLD+ TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVA+GLARRC+VQVSYAIGVPEPLSVFVDSYGTG IPDK IL+++K+NFDFRPGMI+INLDLKRGGNGRF KTAAYGHFGRDDPD
Sbjct:  148 LGAKLTEVRKNGTCAWLRPDGKTQVTIEYRNDGGAMVPERVHTVLISTQHDETVTNDQIAADLKQHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVPEPLSVFVDSYGTGTIPDKVILELIKKNFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPD 377
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 403.675 bits (1036), Expect = 4.848e-112
Identity = 198/230 (86.09%), Postives = 211/230 (91.74%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGA+LT+VRKNGTC WLRPDGKTQVTVEYYNENGAMVP+RVHTVLISTQHDETVTNDEIAADLK+HVIKPVIP+KYLD+ TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYI RQAAKSIVASGLARRCIVQ+SYAIGVPEPLSVFVD+YGTGKI D+EILKIVKENFDFRPGMI+I LDLK+GGN R+LKTAAYGHFGR+DPD
Sbjct:  152 LGARLTEVRKNGTCAWLRPDGKTQVTVEYYNENGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSRKDPTKVDRSGAYIARQAAKSIVASGLARRCIVQISYAIGVPEPLSVFVDTYGTGKIHDREILKIVKENFDFRPGMIAIALDLKKGGN-RYLKTAAYGHFGREDPD 380
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.269e-112
Identity = 198/230 (86.09%), Postives = 210/230 (91.30%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGA+LT+VRKNGTC W+RPDGKTQVTVEY NE+GAMVPVRVHTVLISTQHDETVTNDEIAADLK+HVIKPVIP KYLD+ TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYI RQAAKSI+ASGLARRCIVQ+SYAIGVPEPLSVFVDSYGTGKIPD+EILK+VKENFDFRPGMISINLDLK+GGN RF+KTAAYGHFGRDD D
Sbjct:  150 LGARLTEVRKNGTCAWVRPDGKTQVTVEYLNEDGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPAKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIIASGLARRCIVQISYAIGVPEPLSVFVDSYGTGKIPDREILKLVKENFDFRPGMISINLDLKKGGN-RFIKTAAYGHFGRDDAD 378
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.080e-111
Identity = 197/230 (85.65%), Postives = 208/230 (90.43%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGAKLT+VRKNGTCPWLRP GKTQVTVEY N+NGAMVP RVHTVLISTQHDETV NDEIA DLK+HVIKPVIP+KYLD+ TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLS+FVD+YGTG IPDKEIL+I+KE+FDFRPGMISINLDLKRGGNGR  KTAAYGHFGRDDPD
Sbjct:  148 LGAKLTEVRKNGTCPWLRPHGKTQVTVEYRNDNGAMVPERVHTVLISTQHDETVPNDEIAPDLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSLFVDTYGTGSIPDKEILEIIKEHFDFRPGMISINLDLKRGGNGRSQKTAAYGHFGRDDPD 377
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.080e-111
Identity = 195/230 (84.78%), Postives = 209/230 (90.87%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGAKLT+VRKNGTCPWLRPDGKTQVTVEY NE GAMVP+RVHTVL+STQHDETVTN++IA DLK+HVIKPVIP +YLDD+TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++K+NFDFRPGMISINLDLKRGGN RF KTAAYGHFGRDDPD
Sbjct:  148 LGAKLTEVRKNGTCPWLRPDGKTQVTVEYRNEGGAMVPIRVHTVLVSTQHDETVTNEQIAKDLKEHVIKPVIPPQYLDDQTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKKNFDFRPGMISINLDLKRGGNFRFQKTAAYGHFGRDDPD 377
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.406e-111
Identity = 197/230 (85.65%), Postives = 208/230 (90.43%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGA+LT+VRKNGTC WLRPDGKTQVT+EY NE GAMVPVRVHTVLISTQHDETVTNDEIAADLK+HVIKPVIP KYLD+ TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYI RQAAKSI+ASGLARRCIVQ+SYAIGVPEPLSVFVDSYGTGKIPD+EILK+VKENFDFRPGMISINLDLK+GG  RF+KTAAYGHFGRDD D
Sbjct:  150 LGARLTEVRKNGTCAWLRPDGKTQVTIEYLNEGGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPGKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIIASGLARRCIVQISYAIGVPEPLSVFVDSYGTGKIPDREILKLVKENFDFRPGMISINLDLKKGGK-RFIKTAAYGHFGRDDAD 378
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 3.142e-111
Identity = 197/230 (85.65%), Postives = 211/230 (91.74%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGA+LT+VRKNGTCPWLRPDGKTQVTVEY N++GAM+PVRVHTVLISTQHDETVTNDEIAADLK+HVIKPVIP++YLD+KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAY+ RQAAKSIVAS LARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKENFDFRPG+I+INL LKRGG  R+LKTAAYGHFGRDDPD
Sbjct:  149 LGARLTEVRKNGTCPWLRPDGKTQVTVEYRNDHGAMIPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASELARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGLITINLGLKRGGY-RYLKTAAYGHFGRDDPD 377
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 4.104e-111
Identity = 195/230 (84.78%), Postives = 208/230 (90.43%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGAKLT+VRKNGTCPWLRPDGKTQVT+EY NE GAMVP RVHTVLISTQHDETVTND+IAADLK+HVIKPVIP+KYLD+ TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKSIVA+GLARRC+VQVSYAIGV   LS+FVDSYGTG IPDKEIL+I+KE+FDFRPGMI+INLDLKRGGNGRF KTAAYGHFGRDDPD
Sbjct:  148 LGAKLTEVRKNGTCPWLRPDGKTQVTIEYRNEGGAMVPERVHTVLISTQHDETVTNDQIAADLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVRGALSIFVDSYGTGSIPDKEILEIIKEHFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPD 377
[Close]
BLAST of FC931292 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 5.360e-111
Identity = 198/230 (86.09%), Postives = 209/230 (90.87%), Query Frame = 2 
Query:    2 LGAKLTDVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKQHVIKPVIPDKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPD 691
            LGA+LT+VRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLK+HVIKPVIP+KYLD+KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYI RQAAKSIVA+GLARRCIVQ+SYAIGV EPLSVFVD+YGTGKI DK+ILKIVKE FDFRPGMI+ NLDL RGGN R+LKTAAYGHFGRDD D
Sbjct:  148 LGARLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVAAGLARRCIVQISYAIGVAEPLSVFVDTYGTGKISDKDILKIVKETFDFRPGMIANNLDLLRGGN-RYLKTAAYGHFGRDDAD 376
The following BLAST results are available for this feature:
BLAST of FC931292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_ORYSJ3.712e-11285.22S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK3_PICSI4.848e-11285.22S-adenosylmethionine synthetase 3 OS=Picea sitchen... [more]
METK2_DIACA4.848e-11286.09S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]
METK3_HORVU8.269e-11286.09S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK_PINBN1.080e-11185.65S-adenosylmethionine synthetase OS=Pinus banksiana... [more]
METK1_VITVI1.080e-11184.78S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK2_HORVU2.406e-11185.65S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK_MUSAC3.142e-11185.65S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK2_PINCO4.104e-11184.78S-adenosylmethionine synthetase 2 OS=Pinus contort... [more]
METK_MESCR5.360e-11186.09S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103E11EF PostHarvP1 Citrus clementina cDNA clone C34103E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931292 ID=FC931292; Name=FC931292; organism=Citrus clementina; type=EST; length=691bp
GCTTGGTGCTAAGCTTACAGACGTGAGGAAGAATGGGACCTGTCCGTGGC
TGAGGCCAGATGGCAAAACACAAGTCACTGTTGAGTATTACAATGAGAAT
GGCGCCATGGTTCCTGTTCGTGTCCATACTGTGCTCATCTCAACTCAGCA
CGATGAGACTGTAACTAATGATGAGATTGCTGCAGATCTCAAGCAACATG
TGATCAAGCCTGTGATTCCTGACAAGTACTTGGATGACAAAACTATTTTC
CATCTTAACCCATCTGGCCGTTTTGTGATTGGTGGCCCTCACGGTGATGC
TGGGCTCACCGGCCGGAAGATTATTATTGATACTTATGGTGGCTGGGGGG
CACACGGTGGTGGGGCTTTCTCAGGGAAAGATCCTACCAAGGTTGATAGA
AGCGGTGCTTACATTGTAAGGCAAGCTGCTAAGAGTATTGTGGCAAGCGG
GCTTGCCAGGAGATGCATTGTTCAGGTTTCTTACGCTATTGGTGTGCCCG
AGCCTTTGTCAGTTTTTGTTGATAGTTATGGGACTGGGAAGATCCCTGAC
AAGGAAATTTTGAAGATTGTGAAGGAGAATTTTGATTTTAGGCCTGGGAT
GATTTCTATTAATCTTGATCTCAAGAGGGGTGGCAACGGCAGGTTCTTGA
AGACTGCCGCTTATGGGCACTTTGGCAGAGATGATCCTGAT
back to top