FC931293

Overview
NameFC931293
Unique NameFC931293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_ENT38 (Uridine kinase OS=Enterobacter sp. (strain 638) GN=udk PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 39/161 (24.22%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  267 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +  K+H  +++G+AG S +GK++    +   +        I VI  D+Y  D S +     +  N+D P   D+  L ++++ +K G  + +P+Y +   +R    T+ +   +++I+EGI  L++ +LR  ++  + V   +   L++R+ RD++   R+
Sbjct:    1 MTDKSHQCVIIGIAGASASGKSLIASTLYRELRDQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHPNAMDHSLLFQHLQMIKNGTPIDLPVYSYVDHTRT-QDTIHIEPKKVIILEGILLLTDARLREAMNFSIFVDTPLDICLMRRIKRDVNERGRS 160          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_ALKMQ (Uridine kinase OS=Alkaliphilus metalliredigens (strain QYMF) GN=udk PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 45/149 (30.20%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR-IVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLAR 707
            I +G+ G +G+GK+     +   +P  +IA+I  D+Y  D S +     +  N+D P   D   L E++  L + K ++ PIYDF+  +R   +  EV   R I+I+EGI  L +  LR ++D+++ V       +++R+ RD+    R
Sbjct:    5 IFIGITGGTGSGKSTVARAIFESLPEKNIAIIEQDSYYRDQSHLALEERVKTNYDHPLAFDTALLTEHLMLLAQNKTIEKPIYDFERHTR--KKEFEVIEPRDIMILEGIMILDDPALRDMLDIKIFVDTDADVRIIRRIRRDMEERGR 151          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: UCK2_XENTR (Uridine-cytidine kinase 2 OS=Xenopus tropicalis GN=uck2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 45/156 (28.85%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNY------NDSSRIIDG--NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLAR 707
            L+GV+G + +GK+    K++  +           + +++ D++         S+ + G  NFD P   D + +L+ ++ L EGK VQ+P+YDF + SR    TL V  + +V+ EGI A   +++R +  +++ V       L +RV RDI+   R
Sbjct:   21 LIGVSGGTASGKSSVCSKIVQLLGQNEVDHHQKQVVMLSQDSFYRILTPEQKSKALKGQFNFDHPDAFDNELILKTLKELMEGKTVQIPVYDFVTHSR-KEETLVVYPADVVLFEGILAFYMQEIRDMFQMKLFVDTDADTRLSRRVLRDINERGR 175          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_SHEFN (Uridine kinase OS=Shewanella frigidimarina (strain NCIMB 400) GN=udk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 42/147 (28.57%), Postives = 78/147 (53.06%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDI 692
            +++G+AG S +GK++  + +   +        I VI  D Y +D S +     +  N+D P+  D+  L  ++  LK+G+ V +P Y +   +RI   TL +   +++I+EGI  L+  KLR L+D  V +   +    ++R+ RD+
Sbjct:    7 VIIGIAGASASGKSLIAKTIFEELCRDLGTNQIGVINEDAYYHDQSHLTMEDRVKTNYDHPKALDHQLLASHLTQLKQGEPVSIPCYSYTEHTRIS-DTLTMQPKKVIILEGILLLTNPKLRDLMDASVFMDTPLDICFLRRLTRDV 152          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_PECCP (Uridine kinase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=udk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 41/161 (25.47%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  267 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +  ++H  +++G++G S +GK++ +  +   +        I VI+ D+Y  D S +     +  N+D P   D+  LL++++ LK G+A++VP Y +   +R    T+ +   +++I+EGI  L++ +LR  ++  + V   +   L++R+ RD++   R+
Sbjct:    1 MTDQSHQCVIIGISGASASGKSLISSTLYRELRDQVGDQHIGVISEDSYYKDQSHLTMEERVKTNYDHPSSMDHSLLLKHLQMLKAGQAIEVPQYSYVEHTR-KQETVHIELKKVIILEGILLLTDARLRDEMNFSIFVDTPLDICLLRRMRRDVNERGRS 160          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_KLEP7 (Uridine kinase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=udk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 41/161 (25.47%), Postives = 85/161 (52.80%), Query Frame = 3
Query:  267 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +   +H  ++VG+AG S +GK++    +   +        I VI  D+Y  D S +     +  N+D P   D+  L ++++ LK G+ +++P+Y +   +R    T+ V   +++I+EGI  L++ +LR  ++  + V   +   L++R+ RD++   R+
Sbjct:    1 MTDMSHQCVIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTP-NTIHVEPKKVIILEGILLLTDARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRS 160          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_KLEP3 (Uridine kinase OS=Klebsiella pneumoniae (strain 342) GN=udk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 41/161 (25.47%), Postives = 85/161 (52.80%), Query Frame = 3
Query:  267 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +   +H  ++VG+AG S +GK++    +   +        I VI  D+Y  D S +     +  N+D P   D+  L ++++ LK G+ +++P+Y +   +R    T+ V   +++I+EGI  L++ +LR  ++  + V   +   L++R+ RD++   R+
Sbjct:    1 MTDMSHQCVIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTP-NTIHVEPKKVIILEGILLLTDARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRS 160          
The following BLAST results are available for this feature:
BLAST of FC931293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
URK_ENT387.030e-1124.22Uridine kinase OS=Enterobacter sp. (strain 638) GN... [more]
URK_ALKMQ7.030e-1130.20Uridine kinase OS=Alkaliphilus metalliredigens (st... [more]
UCK2_XENTR7.030e-1128.85Uridine-cytidine kinase 2 OS=Xenopus tropicalis GN... [more]
URK_SHEFN9.182e-1128.57Uridine kinase OS=Shewanella frigidimarina (strain... [more]
URK_PECCP9.182e-1125.47Uridine kinase OS=Pectobacterium carotovorum subsp... [more]
URK_KLEP79.182e-1125.47Uridine kinase OS=Klebsiella pneumoniae subsp. pne... [more]
URK_KLEP39.182e-1125.47Uridine kinase OS=Klebsiella pneumoniae (strain 34... [more]

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Properties
Property NameValue
Genbank descriptionC34103E12EF PostHarvP1 Citrus clementina cDNA clone C34103E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931293 ID=FC931293; Name=FC931293; organism=Citrus clementina; type=EST; length=739bp
GGTTCATCTTGATTCCTAAGAATTCACTGTTCCAAAAAAAGGAAAAAAAA
TCAAAGAAAAGCAAGGGAGGGAATATATATTGTGGAACTTATATGGCTCA
GGACACTTCTTCAGGTGCTGATTCACCTCGACGACGACCTGGTCTGTTGC
GAGATCAGGTTCAGTTGGTTAAGAAGAAGGACTCTGATCGCTATGAGATT
GTTCCTATAGAAGATACATTGTCATTTGAAAAAGGTTTTTTCATAGTAAT
TCGTGCATGCCAATTGTTGGCTCAAAAGAATCATGGGATAATATTAGTTG
GAGTAGCAGGTCCCTCCGGAGCTGGAAAGACTGTCTTCACTGAGAAGGTG
CTCAACTTTATGCCCAGTATTGCTGTGATAACCATGGACAACTACAACGA
TTCTAGTCGTATCATTGATGGCAACTTCGATGACCCGCGCTTGACAGATT
ATGACACACTGCTTGAAAACATTCGTGGTTTAAAGGAAGGGAAAGCTGTT
CAAGTCCCAATTTACGACTTCAAGTCTAGTTCTCGCATTGGTTACAGGAC
ACTTGAAGTCCCTAGCTCCCGCATTGTGATTATTGAAGGCATCTATGCCT
TAAGTGAAAAACTGCGGCCTTTGATAGATCTTCGTGTATCTGTTACGGGT
GGAGTTCATTTTGATCTCGTAAAGCGAGTTTTTCGTGACATTCACGTGTT
GGCCAGAGCCTGAAGAGATAATCATCAATATCTGAACGG
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