FC931293

Overview
NameFC931293
Unique NameFC931293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_BORAP (Uridine kinase OS=Borrelia afzelii (strain PKo) GN=udk PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA-LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA*RD-NHQYLN 737
            ++G++G SG+GKT    K+  F+P   +I+ DNY  S           NFD P   D +   E+++ LK+   + +P+YDF +  R     L VP+  ++I+EGI   + E++R LIDL++ +        ++R+ RDI    R       QYLN
Sbjct:    4 IIGISGGSGSGKTTVVSKISEFIPEFVLISQDNYYKSVGDYEYEFSKVNFDHPDAFDNNLFYEHLKNLKKNSPIDMPLYDFINHKRQLKTVLVVPTP-VIIVEGIMIFVEERVRNLIDLKIYIDTPNDIRFIRRLRRDISKRGRTLESVIDQYLN 157          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_LACRJ (Uridine kinase OS=Lactobacillus reuteri (strain JCM 1112) GN=udk PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 48/149 (32.21%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  273 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNY-NDSSRIIDG-----NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 692
            Q+N   +++GV G SG+GKT  + K+ + +   +I +I  D Y ND S +        N+D P   D D L++ +  L+  KA+++P+YD+   +R   +T+ V  + ++I+EGI  L  E+LR L+D++V V       +++R+ RD+
Sbjct:    4 QQNKRPVVIGVTGGSGSGKTTVSNKIYDQLHGQAIQIINQDTYYNDQSDMTMDERKAVNYDHPLAFDTDFLIKQLTDLRSNKAIEMPVYDYTQYTR-SDKTVHVEPTDVIILEGILILDDERLRDLMDIKVYVDTDDDIRIIRRIQRDM 151          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_LACRD (Uridine kinase OS=Lactobacillus reuteri (strain DSM 20016) GN=udk PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 48/149 (32.21%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  273 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNY-NDSSRIIDG-----NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 692
            Q+N   +++GV G SG+GKT  + K+ + +   +I +I  D Y ND S +        N+D P   D D L++ +  L+  KA+++P+YD+   +R   +T+ V  + ++I+EGI  L  E+LR L+D++V V       +++R+ RD+
Sbjct:    4 QQNKRPVVIGVTGGSGSGKTTVSNKIYDQLHGQAIQIINQDTYYNDQSDMTMDERKAVNYDHPLAFDTDFLIKQLTDLRSNKAIEMPVYDYTQYTR-SDKTVHVEPTDVIILEGILILDDERLRDLMDIKVYVDTDDDIRIIRRIQRDM 151          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK1_SCHPO (Uridine kinase OS=Schizosaccharomyces pombe GN=urk1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  297 VGVAGPSGAGKTVFTE---KVLNFMPSIAVITMDNYNDSSRII--------DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLAR 707
            +G+AGPSG+GKT   +   K LN +P + ++++D++  S            D +FD P   D+D L   +  LK+G+ V +PIY F   +R+   T  +  + I+I+EGI+AL  EK+R L+D+ V +       L +R+ RDI+   R
Sbjct:   24 IGIAGPSGSGKTSVAQLIVKALN-LPHVVILSLDSFYKSLNAEQKKRAFNNDYDFDSPEAIDWDLLFVKLLELKQGRKVDIPIYSFNEHNRLP-ETNTLFGASIIILEGIFALYDEKIRSLLDVSVFLDTDSDVCLSRRLNRDINYRGR 170          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK1_YEAST (Uridine kinase OS=Saccharomyces cerevisiae GN=URK1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 46/144 (31.94%), Postives = 80/144 (55.56%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNY------NDSSRIIDG--NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 692
            ++G+ G SG+GKT    K+++ +  P   +I++DN+       D +R      +FD+P   + D   + I  LKEGK   +P+Y F   +R+  + + +  + +V+IEGIYAL   +L  L+DL++ V   +   L +R+ RDI
Sbjct:   58 IIGIGGASGSGKTSVAAKIVSSINVPWTVLISLDNFYNPLGPEDRARAFKNEYDFDEPNAINLDLAYKCILNLKEGKRTNIPVYSFVHHNRVPDKNIVIYGASVVVIEGIYALYDRRLLDLMDLKIYVDADLDVCLARRLSRDI 201          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STRU0 (Uridine kinase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=udk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 46/143 (32.17%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 692
            I++GV G SG GKT  +  +L+  P+  IA+I  D+Y  D + +     +  N+D P   D D ++E ++ L +G+ V +P+YD+K+ +R   +T       ++I+EGI  L  E+LR L+D+++ V       +++R+ RD+
Sbjct:    6 IIIGVTGGSGGGKTSVSRAILDSFPNARIAMIQHDSYYKDQAHLSFEERVKTNYDHPLAFDTDFMIEQLKELLKGRPVDIPVYDYKAHTR-SDKTFRQEPQDVIIVEGILVLEDERLRDLMDIKLFVDTDDDIRIIRRIKRDM 147          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_BREBN (Uridine kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=udk PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY-NDSSRIIDG-----NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +L+GVAG SG+GKT   +++       S+ +I  D+Y  D S +        N+D P   D D LL +++ L +GKA+Q PIYDFK  +R     ++V    ++I+EG+  L  E++R L+D++V V       + +R+ RDI    R+
Sbjct:    5 VLIGVAGGSGSGKTTVAKELYRQFQNDSVTMIEQDSYYKDQSHLSPEERALTNYDHPFAFDNDLLLAHLQELMQGKAIQKPIYDFKVHNR-KPEQIQVDPKDVIILEGMLILEDERIRNLMDIKVYVDTDADVRIARRIVRDIEERGRS 152          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_CLONN (Uridine kinase OS=Clostridium novyi (strain NT) GN=udk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 47/143 (32.87%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDI 692
            IL+G+ G +G+GK+    ++        IA+I  D+Y  D S +     I  N+D P   D + L+E+++ L +G  +  PIYDFK  +R     +EV +  I+I+EGI  L + +LR L+D+++ V       +++R+ RDI
Sbjct:    5 ILIGITGGTGSGKSTVANEIYESFKDDCIAIIEQDSYYKDQSHLTFEDRIKTNYDHPNAFDTELLVEHLKELSKGNTINKPIYDFKEHTR-KKEVVEVKAKDIIIVEGIMILQDVELRNLLDIKIYVDTDDDVRIIRRILRDI 146          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_BACSU (Uridine kinase OS=Bacillus subtilis GN=udk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 49/149 (32.89%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMD-NYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +++G+AG SG+GKT  T  +       SI +I  D  Y D S +     ++ N+D P   D D L+E+I+ L   + ++ PIYD+K  +R    T+ V    ++I+EGI  L +K LR L+D+++ V       +++R+ RDI+   R+
Sbjct:    6 VVIGIAGGSGSGKTSVTRSIYEQFKGHSILMIQQDLYYKDQSHLPFEERLNTNYDHPLAFDNDYLIEHIQDLLNYRPIEKPIYDYKLHTR-SEETVHVEPKDVIILEGILVLEDKRLRDLMDIKLYVDTDADLRIIRRIMRDINERGRS 153          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_DEIRA (Uridine kinase OS=Deinococcus radiodurans GN=udk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 49/141 (34.75%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  294 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRD 689
            ++GVAG SG+GKT  T +V+  +    +AV+  DNY  D S I     +  N+D P   D+  L E +  L  G  +++P YDF   +R  + T  +P  R+V++EG +AL  E+LR  + L+V V        ++R+ RD
Sbjct:    9 VIGVAGGSGSGKTTVTRRVIETVGREGVAVLNQDNYYRDQSDIPFESRLHTNYDHPAAFDWALLREQLDALLAGVPIEMPEYDFTQHTRAAHTTRVLP-GRVVVLEGFFALYDEELRSRMGLKVFVDADADVRFIRRLLRD 148          
The following BLAST results are available for this feature:
BLAST of FC931293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
URK_BORAP1.048e-1432.26Uridine kinase OS=Borrelia afzelii (strain PKo) GN... [more]
URK_LACRJ1.788e-1432.21Uridine kinase OS=Lactobacillus reuteri (strain JC... [more]
URK_LACRD1.788e-1432.21Uridine kinase OS=Lactobacillus reuteri (strain DS... [more]
URK1_SCHPO1.788e-1434.23Uridine kinase OS=Schizosaccharomyces pombe GN=urk... [more]
URK1_YEAST2.335e-1431.94Uridine kinase OS=Saccharomyces cerevisiae GN=URK1... [more]
URK_STRU03.050e-1432.17Uridine kinase OS=Streptococcus uberis (strain ATC... [more]
URK_BREBN3.050e-1434.23Uridine kinase OS=Brevibacillus brevis (strain 47 ... [more]
URK_CLONN3.983e-1432.87Uridine kinase OS=Clostridium novyi (strain NT) GN... [more]
URK_BACSU3.983e-1432.89Uridine kinase OS=Bacillus subtilis GN=udk PE=3 SV... [more]
URK_DEIRA5.202e-1434.75Uridine kinase OS=Deinococcus radiodurans GN=udk P... [more]

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Properties
Property NameValue
Genbank descriptionC34103E12EF PostHarvP1 Citrus clementina cDNA clone C34103E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931293 ID=FC931293; Name=FC931293; organism=Citrus clementina; type=EST; length=739bp
GGTTCATCTTGATTCCTAAGAATTCACTGTTCCAAAAAAAGGAAAAAAAA
TCAAAGAAAAGCAAGGGAGGGAATATATATTGTGGAACTTATATGGCTCA
GGACACTTCTTCAGGTGCTGATTCACCTCGACGACGACCTGGTCTGTTGC
GAGATCAGGTTCAGTTGGTTAAGAAGAAGGACTCTGATCGCTATGAGATT
GTTCCTATAGAAGATACATTGTCATTTGAAAAAGGTTTTTTCATAGTAAT
TCGTGCATGCCAATTGTTGGCTCAAAAGAATCATGGGATAATATTAGTTG
GAGTAGCAGGTCCCTCCGGAGCTGGAAAGACTGTCTTCACTGAGAAGGTG
CTCAACTTTATGCCCAGTATTGCTGTGATAACCATGGACAACTACAACGA
TTCTAGTCGTATCATTGATGGCAACTTCGATGACCCGCGCTTGACAGATT
ATGACACACTGCTTGAAAACATTCGTGGTTTAAAGGAAGGGAAAGCTGTT
CAAGTCCCAATTTACGACTTCAAGTCTAGTTCTCGCATTGGTTACAGGAC
ACTTGAAGTCCCTAGCTCCCGCATTGTGATTATTGAAGGCATCTATGCCT
TAAGTGAAAAACTGCGGCCTTTGATAGATCTTCGTGTATCTGTTACGGGT
GGAGTTCATTTTGATCTCGTAAAGCGAGTTTTTCGTGACATTCACGTGTT
GGCCAGAGCCTGAAGAGATAATCATCAATATCTGAACGG
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