FC931293

Overview
NameFC931293
Unique NameFC931293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STRP1 (Uridine kinase OS=Streptococcus pyogenes serotype M1 GN=udk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 692
            I++GV G SG GKT  +  +L+  P+  IA+I  D+Y  D S +     +  N+D P   D D +++ ++ L  G+ V +PIYD+K  +R      + P   ++I+EGI  L  E+LR L+D+++ V       +++R+ RD+
Sbjct:    6 IIIGVTGGSGGGKTSVSRAILDSFPNARIAMIQHDSYYKDQSHMSFEERVKTNYDHPLAFDTDFMIQQLKELLAGRPVDIPIYDYKKHTRSNTTFRQDPQD-VIIVEGILVLEDERLRDLMDIKLFVDTDDDIRIIRRIKRDM 147          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_LACJO (Uridine kinase OS=Lactobacillus johnsonii GN=udk PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 49/150 (32.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS---IAVITMDNY---NDSSRIIDG---NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            I++G+AG SG+GKT    ++ + +     I ++T D+Y   ND+  + D    N+D P   D   L+E +R L + KAV++P+YDF + +R   +T+    + I+I+EGI  L E+ LR L+ ++V V        ++R+ RD     R+
Sbjct:    7 IIIGIAGGSGSGKTTIAHEIYDQLQQDDHILIMTQDSYYKNNDNLSMADRKKINYDHPDAFDMPLLVEQLRQLMDYKAVEMPVYDFTAHTR-SEKTIHTEPADIIILEGILVLGEENLRDLMSIKVFVDTDDDIRFIRRLERDTQERGRS 155          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_UREPA (Uridine kinase OS=Ureaplasma parvum GN=udk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.159e-13
Identity = 41/145 (28.28%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDSSRIIDG------NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIH 695
            IL+ +AG SG+GKT F  +++  +P   +  VI  D+Y  S+  ++       N+D P   +++ + E +  +K+ K ++VPIYD+K+  R+  +T+++    ++++EGIYA+  + +  + DL++ +       L++R+ RD++
Sbjct:    7 ILILIAGASGSGKTTFANEIIARIPKNTTSVVICQDSYYISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDISDVDVIVLEGIYAIYDDVINQIADLKIFIETPKDECLIRRILRDVN 150          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_UREP2 (Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=udk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.159e-13
Identity = 41/145 (28.28%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDSSRIIDG------NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIH 695
            IL+ +AG SG+GKT F  +++  +P   +  VI  D+Y  S+  ++       N+D P   +++ + E +  +K+ K ++VPIYD+K+  R+  +T+++    ++++EGIYA+  + +  + DL++ +       L++R+ RD++
Sbjct:    7 ILILIAGASGSGKTTFANEIIARIPKNTTSVVICQDSYYISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDISDVDVIVLEGIYAIYDDVINQIADLKIFIETPKDECLIRRILRDVN 150          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: UCKL1_MOUSE (Uridine-cytidine kinase-like 1 OS=Mus musculus GN=Uckl1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.977e-13
Identity = 46/144 (31.94%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  297 VGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNY--------NDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSR-IGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDI 692
            +G+ G S +GKT     ++  +  P + +++MD++         + +   + NFD P   D+D ++  ++ LK+G++VQVPIYDF + SR   ++TL    + ++I EGI A ++K L  L+D+++ V       LV+R+ RDI
Sbjct:  101 IGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTQQQQEQAACNNFNFDHPDAFDFDLIISTLKKLKQGRSVQVPIYDFTTHSRKKDWKTLY--GANVIIFEGIMAFADKTLLELLDMKIFVDTDSDIRLVRRLRRDI 242          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STRTD (Uridine kinase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=udk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 49/149 (32.89%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            I++GV G SG GKT  +  +L+  P   IA+I  D+Y  D S +     +  N+D P   D D ++E+I  L  G+ V +PIYD+   +R   +T       + I+EGI  L +K LR L+D+++ V       +++R+ RD+    R+
Sbjct:    6 IIIGVTGGSGGGKTSVSRAILSNFPDEKIAMIEHDSYYKDQSHLTFEERVSTNYDHPFAFDTDLMIEHINELIAGRPVDIPIYDYTQHTR-SNKTYRQEPQDVFIVEGILVLEDKRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERGRS 153          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STRT2 (Uridine kinase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=udk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 49/149 (32.89%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            I++GV G SG GKT  +  +L+  P   IA+I  D+Y  D S +     +  N+D P   D D ++E+I  L  G+ V +PIYD+   +R   +T       + I+EGI  L +K LR L+D+++ V       +++R+ RD+    R+
Sbjct:    6 IIIGVTGGSGGGKTSVSRAILSNFPDEKIAMIEHDSYYKDQSHLTFEERVSTNYDHPFAFDTDLMIEHINELIAGRPVDIPIYDYTQHTR-SNKTYRQEPQDVFIVEGILVLEDKRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERGRS 153          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_STRT1 (Uridine kinase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=udk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 49/149 (32.89%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            I++GV G SG GKT  +  +L+  P   IA+I  D+Y  D S +     +  N+D P   D D ++E+I  L  G+ V +PIYD+   +R   +T       + I+EGI  L +K LR L+D+++ V       +++R+ RD+    R+
Sbjct:    6 IIIGVTGGSGGGKTSVSRAILSNFPDEKIAMIEHDSYYKDQSHLTFEERVSTNYDHPFAFDTDLMIEHINELIAGRPVDIPIYDYTQHTR-SNKTYRQEPQDVFIVEGILVLEDKRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERGRS 153          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_CLOBM (Uridine kinase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=udk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 46/148 (31.08%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLAR 707
            +L+G+ G +G+GK+   +++ N      IA+I  D+Y  D S I        N+D P   D + L+++++ L +   ++ PIYDF++ +R    T++V    I+I+EGI  L + KLR L+D+++ V       +++R+ RDI+   R
Sbjct:    5 VLIGITGGTGSGKSTVAKEIYNKFDEACIAMIEQDSYYKDQSSIPFEERCKKNYDHPDAFDNELLIDHLKNLVDLNVIEKPIYDFEAHNR-KEETIKVEPRDIIIVEGILVLQDPKLRELLDIKIYVDTDADVRIIRRLLRDINERGR 151          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_VIBPA (Uridine kinase OS=Vibrio parahaemolyticus GN=udk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.372e-13
Identity = 50/156 (32.05%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  279 NHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMD-NYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLAR 707
            N+  ++VG+AG S +GK++    + N + +      I VIT D  YND S +     +  N+D P   D+D L E++  L  G+AV+VP Y +   +R    T   P  +++I+EGI  L++ +LR L+   V +   +   L++RV RD+    R
Sbjct:    4 NNQCVIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDCYYNDQSHLSMEERVKTNYDHPSALDHDLLCEHLEKLVRGEAVEVPEYSYTEHTRTSNTTTMTP-KKVIILEGILLLTDPRLRDLMHATVFMDTPLDICLLRRVKRDVEERGR 158          
The following BLAST results are available for this feature:
BLAST of FC931293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
URK_STRP18.873e-1432.87Uridine kinase OS=Streptococcus pyogenes serotype ... [more]
URK_LACJO8.873e-1432.67Uridine kinase OS=Lactobacillus johnsonii GN=udk P... [more]
URK_UREPA1.159e-1328.28Uridine kinase OS=Ureaplasma parvum GN=udk PE=3 SV... [more]
URK_UREP21.159e-1328.28Uridine kinase OS=Ureaplasma parvum serovar 3 (str... [more]
UCKL1_MOUSE1.977e-1331.94Uridine-cytidine kinase-like 1 OS=Mus musculus GN=... [more]
URK_STRTD2.582e-1332.89Uridine kinase OS=Streptococcus thermophilus (stra... [more]
URK_STRT22.582e-1332.89Uridine kinase OS=Streptococcus thermophilus (stra... [more]
URK_STRT12.582e-1332.89Uridine kinase OS=Streptococcus thermophilus (stra... [more]
URK_CLOBM2.582e-1331.08Uridine kinase OS=Clostridium botulinum (strain Lo... [more]
URK_VIBPA3.372e-1332.05Uridine kinase OS=Vibrio parahaemolyticus GN=udk P... [more]

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Properties
Property NameValue
Genbank descriptionC34103E12EF PostHarvP1 Citrus clementina cDNA clone C34103E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931293 ID=FC931293; Name=FC931293; organism=Citrus clementina; type=EST; length=739bp
GGTTCATCTTGATTCCTAAGAATTCACTGTTCCAAAAAAAGGAAAAAAAA
TCAAAGAAAAGCAAGGGAGGGAATATATATTGTGGAACTTATATGGCTCA
GGACACTTCTTCAGGTGCTGATTCACCTCGACGACGACCTGGTCTGTTGC
GAGATCAGGTTCAGTTGGTTAAGAAGAAGGACTCTGATCGCTATGAGATT
GTTCCTATAGAAGATACATTGTCATTTGAAAAAGGTTTTTTCATAGTAAT
TCGTGCATGCCAATTGTTGGCTCAAAAGAATCATGGGATAATATTAGTTG
GAGTAGCAGGTCCCTCCGGAGCTGGAAAGACTGTCTTCACTGAGAAGGTG
CTCAACTTTATGCCCAGTATTGCTGTGATAACCATGGACAACTACAACGA
TTCTAGTCGTATCATTGATGGCAACTTCGATGACCCGCGCTTGACAGATT
ATGACACACTGCTTGAAAACATTCGTGGTTTAAAGGAAGGGAAAGCTGTT
CAAGTCCCAATTTACGACTTCAAGTCTAGTTCTCGCATTGGTTACAGGAC
ACTTGAAGTCCCTAGCTCCCGCATTGTGATTATTGAAGGCATCTATGCCT
TAAGTGAAAAACTGCGGCCTTTGATAGATCTTCGTGTATCTGTTACGGGT
GGAGTTCATTTTGATCTCGTAAAGCGAGTTTTTCGTGACATTCACGTGTT
GGCCAGAGCCTGAAGAGATAATCATCAATATCTGAACGG
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