FC931293

Overview
NameFC931293
Unique NameFC931293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_CLOPE (Uridine kinase OS=Clostridium perfringens GN=udk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA*RD-NHQYLN 737
            I +G+ G +G+GK+   +++        IA+I  D+Y  D S +     +  N+D P   D + L+ ++  L  G ++Q P YDF   +RI   T +V    IVI+EGI  L + ++R L+D+++ V       +++R+ RDI+   R      +QYLN
Sbjct:    5 IFIGITGGTGSGKSTIAKEIYRQFGEDCIAMIEQDSYYKDQSHLSMEDRVKTNYDHPNAFDNNLLVSHLESLLNGHSIQKPSYDFSIHNRI-EDTTKVEPKEIVIVEGILILEDPRIRELLDIKIYVDTDADVRIIRRMVRDINERGRTMESVINQYLN 162          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_CLOP1 (Uridine kinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=udk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 49/159 (30.82%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA*RD-NHQYLN 737
            I +G+ G +G+GK+   +++        IA+I  D+Y  D S +     +  N+D P   D + L+ ++  L  G ++Q P YDF   +RI   T +V    IVI+EGI  L + ++R L+D+++ V       +++R+ RDI+   R      +QYLN
Sbjct:    5 IFIGITGGTGSGKSTIAKEIYRQFGEDCIAMIEQDSYYKDQSHLSMEDRVKTNYDHPNAFDNNLLVSHLESLLNGHSIQKPSYDFSIHNRI-EDTTKVEPKEIVIVEGILILEDPRIRELLDIKIYVDTDADVRIIRRMVRDINERGRTMESVINQYLN 162          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_ESCF3 (Uridine kinase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=udk PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 43/161 (26.71%), Postives = 87/161 (54.04%), Query Frame = 3
Query:  267 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMD-NYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +  ++H  +++G+AG S +GK++    +   +        I VI  D  Y D S +     +  N+D P   D+  LLE+++ LK G A+ +P+Y +   +R+   T++V   +++I+EGI  L++ +LR  ++  + V   +   L++R+ RD++   R+
Sbjct:    1 MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVKVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS 160          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_CLOPS (Uridine kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=udk PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 49/159 (30.82%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  291 ILVGVAGPSGAGKTVFTEKVLNFMPS--IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA*RD-NHQYLN 737
            I +G+ G +G+GK+   +++        IA+I  D+Y  D S +     +  N+D P   D + L+ ++  L  G  +Q P YDF   +RI   T +V    IVI+EGI  L + ++R L+D+++ V       +++R+ RDI+   R      +QYLN
Sbjct:    5 IFIGITGGTGSGKSTIAKEIYRQFGEECIAMIEQDSYYKDQSHLSMDDRVKTNYDHPNAFDNNLLVSHLESLLNGHCIQKPSYDFSIHNRI-EDTTKVEPKEIVIVEGILILEDPRIRELLDIKIYVDTDADVRIIRRMVRDINERGRTIESVINQYLN 162          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_VIBCH (Uridine kinase OS=Vibrio cholerae GN=udk PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 3
Query:  276 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMD-NYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLAR 707
            +N+  ++VG+AG S +GK++    + N + +      I VIT D  Y D S +     +  N+D P   D+D L ++++ L  G+AV+VP Y +   +R    T   P  +++I+EGI  L++ +LR L+   V +   +   L++RV RD+    R
Sbjct:    3 ENNQCVIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDCYYKDQSHLSMEERVKTNYDHPSALDHDLLCQHLQMLARGEAVEVPEYSYTEHTRTEQTTTMTP-KKVIILEGILLLTDPRLRDLMHATVFMDTPLDICLLRRVKRDVQERGR 158          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_ERWT9 (Uridine kinase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=udk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 44/161 (27.33%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  267 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +A K+H  ++VG+AG S +GK++    +   +       +I VI  D Y  D S +     +  N+D P   D+  LL++++ LK G+A+ +P+Y +   +R   +T+ +   +++I+EGI  L++ +LR  ++  + V   +   L++R+ RD++   R+
Sbjct:    1 MADKSHQCVIVGIAGASASGKSLIASTLYREVRERVGDENIGVIPEDAYYKDQSHLTMEERVKTNYDHPSAMDHSLLLQHLQMLKAGQAIDLPVYSYVEHTRT-QKTIRLEPKKVIILEGILLLTDARLRQEMNFSIFVDTPLDICLMRRMKRDVNERGRS 160          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_VIBFM (Uridine kinase OS=Vibrio fischeri (strain MJ11) GN=udk PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 47/156 (30.13%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  279 NHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLAR 707
            NH  I+VG+AG S +GK++    + N + +      I VIT D+Y  D S +     +  N+D P   D++ L E++  L  G+AV +P Y +   +R     +  P  +++I+EGI  L++ +LR L+   V +   +   L++R  RD+    R
Sbjct:    6 NHHCIIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKTNYDHPNALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRTSEVDVMTP-KKVIILEGILLLTDPRLRNLMHASVFMDTPLDICLLRRARRDVEERGR 160          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_VIBF1 (Uridine kinase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=udk PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 47/156 (30.13%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  279 NHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLAR 707
            NH  I+VG+AG S +GK++    + N + +      I VIT D+Y  D S +     +  N+D P   D++ L E++  L  G+AV +P Y +   +R     +  P  +++I+EGI  L++ +LR L+   V +   +   L++R  RD+    R
Sbjct:    6 NHHCIIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKTNYDHPNALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRTSEVDVMTP-KKVIILEGILLLTDPRLRNLMHASVFMDTPLDICLLRRARRDVEERGR 160          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_SHIFL (Uridine kinase OS=Shigella flexneri GN=udk PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 43/161 (26.71%), Postives = 86/161 (53.42%), Query Frame = 3
Query:  267 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMD-NYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +  ++H  +++G+AG S +GK++    +   +        I VI  D  Y D S +     +  N+D P   D+  LLE+++ LK G A+ +P+Y +   +R+   T+ V   +++I+EGI  L++ +LR  ++  + V   +   L++R+ RD++   R+
Sbjct:    1 MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS 160          
BLAST of FC931293 vs. ExPASy Swiss-Prot
Match: URK_SALTY (Uridine kinase OS=Salmonella typhimurium GN=udk PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 41/161 (25.47%), Postives = 87/161 (54.04%), Query Frame = 3
Query:  267 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMDNY-NDSSRI-----IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIHVLARA 710
            +  ++H  +++G+AG S +GK++    +   +        I VI  D+Y  D S +     +  N+D P   D+  L ++++ LK G A+++P+Y +   +R+   T+ V   +++I+EGI  L++ +LR  ++  + V   +   L++R+ RD++   R+
Sbjct:    1 MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHPNAMDHSLLFQHLQALKRGSAIELPVYSYVEHTRM-QETVRVEPKKVIILEGILLLTDARLREEMNFSIFVDTPLDICLMRRIKRDVNERGRS 160          
The following BLAST results are available for this feature:
BLAST of FC931293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
URK_CLOPE1.673e-1230.82Uridine kinase OS=Clostridium perfringens GN=udk P... [more]
URK_CLOP11.673e-1230.82Uridine kinase OS=Clostridium perfringens (strain ... [more]
URK_ESCF32.185e-1226.71Uridine kinase OS=Escherichia fergusonii (strain A... [more]
URK_CLOPS2.185e-1230.82Uridine kinase OS=Clostridium perfringens (strain ... [more]
URK_VIBCH2.854e-1230.57Uridine kinase OS=Vibrio cholerae GN=udk PE=3 SV=2[more]
URK_ERWT92.854e-1227.33Uridine kinase OS=Erwinia tasmaniensis (strain DSM... [more]
URK_VIBFM3.728e-1230.13Uridine kinase OS=Vibrio fischeri (strain MJ11) GN... [more]
URK_VIBF13.728e-1230.13Uridine kinase OS=Vibrio fischeri (strain ATCC 700... [more]
URK_SHIFL3.728e-1226.71Uridine kinase OS=Shigella flexneri GN=udk PE=3 SV... [more]
URK_SALTY3.728e-1225.47Uridine kinase OS=Salmonella typhimurium GN=udk PE... [more]

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Properties
Property NameValue
Genbank descriptionC34103E12EF PostHarvP1 Citrus clementina cDNA clone C34103E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931293 ID=FC931293; Name=FC931293; organism=Citrus clementina; type=EST; length=739bp
GGTTCATCTTGATTCCTAAGAATTCACTGTTCCAAAAAAAGGAAAAAAAA
TCAAAGAAAAGCAAGGGAGGGAATATATATTGTGGAACTTATATGGCTCA
GGACACTTCTTCAGGTGCTGATTCACCTCGACGACGACCTGGTCTGTTGC
GAGATCAGGTTCAGTTGGTTAAGAAGAAGGACTCTGATCGCTATGAGATT
GTTCCTATAGAAGATACATTGTCATTTGAAAAAGGTTTTTTCATAGTAAT
TCGTGCATGCCAATTGTTGGCTCAAAAGAATCATGGGATAATATTAGTTG
GAGTAGCAGGTCCCTCCGGAGCTGGAAAGACTGTCTTCACTGAGAAGGTG
CTCAACTTTATGCCCAGTATTGCTGTGATAACCATGGACAACTACAACGA
TTCTAGTCGTATCATTGATGGCAACTTCGATGACCCGCGCTTGACAGATT
ATGACACACTGCTTGAAAACATTCGTGGTTTAAAGGAAGGGAAAGCTGTT
CAAGTCCCAATTTACGACTTCAAGTCTAGTTCTCGCATTGGTTACAGGAC
ACTTGAAGTCCCTAGCTCCCGCATTGTGATTATTGAAGGCATCTATGCCT
TAAGTGAAAAACTGCGGCCTTTGATAGATCTTCGTGTATCTGTTACGGGT
GGAGTTCATTTTGATCTCGTAAAGCGAGTTTTTCGTGACATTCACGTGTT
GGCCAGAGCCTGAAGAGATAATCATCAATATCTGAACGG
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