FC931305

Overview
NameFC931305
Unique NameFC931305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: ALDH3_BACSU (Probable aldehyde dehydrogenase aldX OS=Bacillus subtilis GN=aldX PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 56/176 (31.82%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  215 RVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            R  +L+  +  +   E +I++A+R+D+ KP  E    E+   K +I+  +  L+ WM P++  +S++   ++  ++ EP GV LI+ PWNYPF+L++ P+  ++AAGN+ ++K S+    +S++ AK++ +  D   + + EG V   + LLDQ   ++ +     V +IVM AAA
Sbjct:   31 RREKLQRFLDSVIAHEEEIIEAIRKDVRKPYHEVKKAEIEGTKKAIRDNMNNLEQWMAPKEVGSSLSP-DANGILMYEPKGVTLILGPWNYPFMLTMAPLAASLAAGNSAIVKLSDFTMNTSNIAAKVIRDAFDEKEVAIFEGEVEVATELLDQPFDHIFFTGSTNVGKIVMTAAA 205          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: CALB_PSEUH (Coniferyl aldehyde dehydrogenase OS=Pseudomonas sp. (strain HR199 / DSM 7063) GN=calB PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 65/179 (36.31%), Postives = 96/179 (53.63%), Query Frame = 2
Query:  215 RVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIY-EVALLKTSIKSALKELKHWMTPEKAKTSITTFPSS-AEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLY--RQFRVARIVMAAAA 739
            R+S+L   + ML E    I DA+  D      E ++  ++A    S+K + + +  WM PE  K     FP + A +  +P GVV +ISPWN+P +L+  P+ G  AAGN  +LKPSE+ P +S+LLA+L+  Y D + +  V G  AE  AL      + L       VA+ +M AAA
Sbjct:   38 RLSRLDRAIAMLLENREAIADAVSADFGNRSREQTLLCDIAGSVASLKDSREHVAKWMEPEHHKAM---FPGAEARVEFQPLGVVGVISPWNFPIVLAFGPLAGIFAAGNRAMLKPSELTPRTSALLAELIARYFDETELTTVLGD-AEVGALFSAQPFDHLIFTGGTAVAKHIMRAAA 212          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: CALB_PSEAE (Probable coniferyl aldehyde dehydrogenase OS=Pseudomonas aeruginosa GN=calB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 57/179 (31.84%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  116 KKKNEVFDAEAASLFVKELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIY-EVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAV 649
            + + E+   EA  LF ++ R  + +        RV  LK+L  +L + +  +++A+ +D      + ++  E+      I  A K +K WM P +    +   P+SA++V +P GVV +I PWNYP  LS+ P+ GA+AAGN +++K SE  PA+  LL  L+        + VV G V
Sbjct:   10 QSQQEINQLEA--LFARQ-RAAYLAQPMPDATQRVQWLKALRDLLFKEQQALIEAIDRDFSARSADETLLAEIMPSLHGIHYAAKRVKKWMKPARRAVGLQFQPASAQVVYQPLGVVGVIVPWNYPLFLSIGPLTGALAAGNRVMIKMSESTPATGRLLKDLLARIFPEDQVAVVLGEV 185          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: HFD1_YEAST (Putative fatty aldehyde dehydrogenase HFD1 OS=Saccharomyces cerevisiae GN=HFD1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 67/213 (31.46%), Postives = 114/213 (53.52%), Query Frame = 2
Query:  119 KKNEVFDAEAASLFVKELRGTFASG-KTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPE-PFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLV--GEYMDLSSIRVVEGAVAETSALLDQSGINMLY--RQFRVARIVMAAAA 739
            K +E+ +      F K+L+ +  +  + K   +R  QLK L   + + E +++DA+ +D  + ++ES + E   L   I   ++ L   + P +   S   F     IV +   G VLII+P+N+P LL+  P+  A+AAGN +VLKPSE+ P ++ ++  L+    + D   I+VV+GA+ ET+ LLD    ++++     RV  IV   AA
Sbjct:   16 KIDEIVEISRNFFFEKQLKLSHENNPRKKDLEFRQLQLKKLYYAVKDHEEELIDAMYKDFHRNKIESVLNETTKLMNDILHLIEILPKLIKPRRVSDSSPPFMFGKTIVEKISRGSVLIIAPFNFPLLLAFAPLAAALAAGNTIVLKPSELTPHTAVVMENLLTTAGFPD-GLIQVVQGAIDETTRLLDCGKFDLIFYTGSPRVGSIVAEKAA 227          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: AL3B2_HUMAN (Aldehyde dehydrogenase family 3 member B2 OS=Homo sapiens GN=ALDH3B2 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 6.615e-17
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 2
Query:  383 MTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAA 736
            M  E   T++     S  I  EPFG+VLII+PWNYP  L+L  +VGA+AAG+ +VLKPSE++  +  +LA+++ +Y+D S   VV G   ET  LL+     + +    RV +IVM AA
Sbjct:    1 MKDEPRSTNLFMKLDSVFIWKEPFGLVLIIAPWNYPLNLTLVLLVGALAAGSCVVLKPSEISQGTEKVLAEVLPQYLDQSCFAVVLGGPQETGQLLEHKLDYIFFTGSPRVGKIVMTAA 119          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: CALB_CAUCR (Probable coniferyl aldehyde dehydrogenase OS=Caulobacter crescentus GN=calB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16
Identity = 59/180 (32.78%), Postives = 92/180 (51.11%), Query Frame = 2
Query:  215 RVSQLKSLMKMLNEREPDIVDALRQDLDKPELES-SIYEVALLKTSIKSALKELKHWMTPEKAKTS---ITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALLDQSGINMLYR-QFRVARIVMAAAA 739
            R+  L   + +L   + +I  A+ QD      E+ S+ +VA     +K A + L  WM PEK KT+   +  F + A +  +P GVV +ISPWN+P  L+  P+ G  AAGN  ++KPSE  PA+S LL  +  +  +   + V  G      A    +  ++++     VA+ VM AAA
Sbjct:   38 RIQWLNRCIDLLVGHQAEIAKAVNQDFGSRSPEATSLTDVAGSIGPLKHAREHLTKWMKPEKHKTTPAILGLFGAKATVQWQPKGVVGVISPWNFPVNLTFAPLAGVFAAGNRAMIKPSEFTPATSDLLKAMFAKAFNEEEVAVFVGGPEVGQAFSGLAFDHLVFTGATSVAKHVMRAAA 217          
BLAST of FC931305 vs. ExPASy Swiss-Prot
Match: ALDH1_ENTHI (Aldehyde dehydrogenase 1 OS=Entamoeba histolytica GN=ALDH1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 48/162 (29.63%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  164 KELRGTFASGKTKSYGWRVSQLKSLMKMLNEREPDIVDALRQDLDKP------ELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIR 631
            K L+ ++++   +    R   L  L +M+ + +  I +A+R+DL +       E+ S I+E+  L+ ++   LK        ++  T        + +  EP+G V +ISPWN+P  LSL P  GA+A GN + LK S+ + A+S L+A+L  +Y+    +R
Sbjct:   72 KTLKESYSTNALRHLDARKEVLYCLYRMVLDNKQAISNAIREDLHRDVGMCVAEVNSVIHEINFLRKNLNKYLKR-------KQVPTVCAQLFGKSFVEREPYGCVCVISPWNFPANLSLIPCAGALACGNTVFLKMSKYSMATSKLIAELCDKYIPSEYLR 226          
The following BLAST results are available for this feature:
BLAST of FC931305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ALDH3_BACSU3.066e-2231.82Probable aldehyde dehydrogenase aldX OS=Bacillus s... [more]
CALB_PSEUH4.895e-2036.31Coniferyl aldehyde dehydrogenase OS=Pseudomonas sp... [more]
CALB_PSEAE2.429e-1931.84Probable coniferyl aldehyde dehydrogenase OS=Pseud... [more]
HFD1_YEAST4.143e-1931.46Putative fatty aldehyde dehydrogenase HFD1 OS=Sacc... [more]
AL3B2_HUMAN6.615e-1742.86Aldehyde dehydrogenase family 3 member B2 OS=Homo ... [more]
CALB_CAUCR2.514e-1632.78Probable coniferyl aldehyde dehydrogenase OS=Caulo... [more]
ALDH1_ENTHI1.168e-1329.63Aldehyde dehydrogenase 1 OS=Entamoeba histolytica ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103F12EF PostHarvP1 Citrus clementina cDNA clone C34103F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931305 ID=FC931305; Name=FC931305; organism=Citrus clementina; type=EST; length=741bp
GGACATCATTTTATTCGTCAGCATTGTTTGTAGCCGAAGCAAAAAAAACA
GAATTCCAAAATCCATCCGTCCTTCTCTCGCTTTTTGAATTGCAATGGGG
AGTGAGGAGGAGACGAAGAAGAAGAATGAGGTGTTCGATGCGGAGGCGGC
GAGCTTGTTCGTGAAGGAGCTGAGAGGAACTTTTGCGTCTGGAAAAACGA
AGAGCTACGGATGGAGAGTGTCTCAGTTGAAGAGTTTGATGAAGATGCTC
AACGAGCGCGAGCCGGACATCGTCGACGCTCTTCGTCAAGATCTCGATAA
GCCGGAACTTGAATCCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTA
TCAAGTCAGCACTCAAGGAACTAAAACACTGGATGACACCAGAGAAGGCT
AAAACTTCAATTACAACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACC
ATTTGGTGTTGTATTAATCATCTCACCATGGAATTATCCTTTCTTGTTGT
CTCTCGATCCAGTTGTTGGGGCTATTGCAGCTGGTAATGCTCTGGTTCTA
AAGCCATCTGAAGTTGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGT
TGGTGAATATATGGATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTG
CTGAAACGTCTGCACTGCTTGATCAAAGTGGGATAAATATGTTATACAGG
CAATTCAGAGTTGCACGCATTGTGATGGCTGCAGCTGCAAG
back to top