FC931354

Overview
NameFC931354
Unique NameFC931354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931354 vs. ExPASy Swiss-Prot
Match: CHI3_CANAL (Chitinase 3 OS=Candida albicans GN=CHT3 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 54/169 (31.95%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  180 VNIAFLNKFGNGQTPEINLAGHCNPA--AGG---CRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGG---TSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSR--GKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNTH 656
            V ++F+++F +    ++N A  C     A G   C+ +++ IK CQ++G  ++                 AK  A  LW+ F       ++ RP   AVLDG DFDIE   +  +  LA  L     +   K  YL AAPQCP+PD  +G  L     D+V++QFYN +
Sbjct:   52 VILSFMHQFPS--PIQLNFANACEGTYTANGILQCQTIAEDIKYCQNKGKTILLSLGGAAGSYGFSDDATAKQFAHTLWDLFGNSKNLATNDRPFYDAVLDGFDFDIENNWSTGYPALATELRTLFQKDTSKNYYLGAAPQCPYPDASVGPLLKQSEIDFVFIQFYNNY 218          
BLAST of FC931354 vs. ExPASy Swiss-Prot
Match: CHI2_COCP7 (Endochitinase 2 OS=Coccidioides posadasii (strain C735) GN=CTS2 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 43/136 (31.62%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  264 GCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS   +  + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYN
Sbjct:   99 GCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYN 234          
BLAST of FC931354 vs. ExPASy Swiss-Prot
Match: CHI2_COCIM (Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 43/136 (31.62%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  264 GCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 650
            GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS   +  + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYN
Sbjct:   99 GCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYN 234          
BLAST of FC931354 vs. ExPASy Swiss-Prot
Match: YKT4_SCHPO (Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 3
Query:  267 CRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLA-RFLSAYSS-RGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNT 653
            C  +   I+ CQ  GIKV+                D  N A  +WN F  G  S RP G AV+DG D ++ +G+   +   A R L  Y+S   +K Y++AAP C  PD  L  A++   FD++ +  +N+
Sbjct:   96 CPQIETDIQVCQENGIKVLLSIGGYNGNFSLNNDDDGTNFAFQVWNIFGSGEDSYRPFGKAVVDGFDLEVNKGTNTAYSAFAKRMLEIYASDPRRKYYISAAPTCMVPDHTLTKAISENSFDFLSIHTFNS 226          
The following BLAST results are available for this feature:
BLAST of FC931354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHI3_CANAL5.863e-1531.95Chitinase 3 OS=Candida albicans GN=CHT3 PE=3 SV=2[more]
CHI2_COCP71.106e-1331.62Endochitinase 2 OS=Coccidioides posadasii (strain ... [more]
CHI2_COCIM1.106e-1331.62Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE... [more]
YKT4_SCHPO1.444e-1332.82Chitinase-like protein PB1E7.04c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC34104C01EF PostHarvP1 Citrus clementina cDNA clone C34104C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931354 ID=FC931354; Name=FC931354; organism=Citrus clementina; type=EST; length=719bp
GACTTGCATAATTGCAGAAATGGCCAGAAACTCTCCAGCAATAGCAACAT
TCGTCTCCCTGCTGGTCACTCTGTCATTGATCAAAGCCTCTCAAGGCGCC
GGCGGCATCGCAATCTATTGGGGCCAAAACGGCAACGAGGGTACCCTCAC
TTCAACCTGTGCCAGGCAAATATGCTTATGTCAACATAGCTTTCCTGAAC
AAGTTTGGCAACGGCCAGACCCCTGAAATTAACCTTGCCGGCCACTGCAA
CCCTGCAGCCGGTGGCTGCAGAGTCGTCAGCGACGCAATCAAGAGTTGTC
AGAGCCGAGGCATCAAAGTTATGCTTTCCCTCGGAGGTGGGGTTGGTAGC
TACTCTTTGGCTTCTGTAGCTGATGCCAAGAATGTAGCTGATTACTTGTG
GAACAATTTCTTGGGGGGAACATCAAGTTCAAGGCCATTAGGTGCTGCTG
TGTTGGACGGTATTGATTTTGATATTGAGCAAGGCTCAACTTTGCATTGG
GATGACCTTGCAAGGTTTCTATCAGCATATAGCAGCCGTGGCAAGAAAGT
TTACTTAACAGCAGCTCCCCAGTGCCCATTTCCTGATAGGTTTCTGGGTG
CTGCTTTGAACACGGGGCTTTTTGATTATGTATGGGTTCAGTTTTACAAC
ACCCACCTTGTCAGTATAGTTCAGGAAATACCCAGAATCTTATAAGTCAT
TTACAGATGGGCTTCATCA
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