FC931356

Overview
NameFC931356
Unique NameFC931356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: TESK1_HUMAN (Dual specificity testis-specific protein kinase 1 OS=Homo sapiens GN=TESK1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 46/162 (28.40%), Postives = 77/162 (47.53%), Query Frame = 2
Query:  245 ENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDD---VAKIADFDLSNQAP 721
            ++F     IG G +  VY    +      + K++         L +V +++RL+H N ++ +G CV         E+ + G+L  +L        + P P LSW  R+ +A+  A+GL YLH K    + HRD+ S N L+  +D    A + DF L+ + P
Sbjct:   55 DDFHCAEKIGAGFFSEVYKVRHRQSGQVMVLKMNKLPSNRGNTLREVQLMNRLRHPNILRFMGVCVHQGQLHALTEYMNGGTLEQLL--------SSPEP-LSWPVRLHLALDIARGLRYLHSKG---VFHRDLTSKNCLVRREDRGFTAVVGDFGLAEKIP 204          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: ROS_RAT (Proto-oncogene tyrosine-protein kinase ROS OS=Rattus norvegicus GN=Ros1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 52/171 (30.41%), Postives = 77/171 (45.03%), Query Frame = 2
Query:  245 ENFGTNALIGEGSYGRVYYG----ILKSGHA---AAIKKLDASKQPDE--EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDD-----VAKIADFDLSNQ 715
            E      L+G G++G VY G    IL  G      A+K L       E  EFL +  ++S+  H N ++ LG C+    + +  E    G L   L   +G      GP+L+    V++ V  +KG  YL +    H IHRD+ + N L+   D     V KI DF L+ +
Sbjct: 1935 EKLSLRLLLGSGAFGEVYEGTAVDILGRGSGEIKVAVKTLKKGSTDQEKIEFLKEAHLMSKFNHPNILKQLGVCLLSEPQYIILELMEGGDLLSYLRKARGT--TLSGPLLTLADLVELCVDISKGCVYLEQM---HFIHRDLAARNCLVSVKDYTSPRVVKIGDFGLARE 2100          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: FRK_RAT (Tyrosine-protein kinase FRK OS=Rattus norvegicus GN=Frk PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 44/171 (25.73%), Postives = 79/171 (46.20%), Query Frame = 2
Query:  197 PIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            P ++   +VD+ +    +      +G G +G V+ G+  +    A+K L        +FL +  ++  L+H   +QL   C       +  E   +GSL + L    G K       +   Q+V +A   A G+ YL  +   + IHRD+ + NVL+ + ++ K+ADF L+
Sbjct:  217 PFDLSYKTVDQWEIDRNSIQLLKRLGSGQFGEVWEGLWNNTTPVAVKTLKPGSMDPNDFLREAQIMKSLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQNDGGSK-------IRLTQQVDMAAQVASGMAYLESQ---NYIHRDLAARNVLVGEHNIYKVADFGLA 377          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: YSK4_HUMAN (SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 45/152 (29.61%), Postives = 79/152 (51.97%), Query Frame = 2
Query:  266 LIGEGSYGRVYYGILKSGHAAAIKKLD-------ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADF 700
            ++G+G+YG VY G+   G   A+K++        A+++   +   +V ++  LKH N V  LG C+   +  +  EF   GS+  I++ R G     P P + + +  K  +   +G+ YLHE     ++HRDIK +NV++    + K+ DF
Sbjct: 1066 ILGKGAYGTVYCGLTSQGQLIAVKQVALDTSNKLAAEKEYRKLQEEVDLLKALKHVNIVAYLGTCLQENTVSIFMEFVPGGSISSIIN-RFG-----PLPEMVFCKYTKQIL---QGVAYLHENC---VVHRDIKGNNVMLMPTGIIKLIDF 1205          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: YES_CHICK (Tyrosine-protein kinase Yes OS=Gallus gallus GN=YES1 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 2
Query:  245 ENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRV-LAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPD 724
            E+      +G+G +G V+ G        AIK L       E FL +  ++ +L+H+  V L  Y V     + +  EF + GSL D L  ++G      G  L   Q V +A   A G+ Y+      + IHRD++++N+L+ D+ V KIADF L+    D
Sbjct:  273 ESLRLEVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPL--YAVVSEEPIYIVTEFMTKGSLLDFL--KEG-----EGKFLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIED 421          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: YES_AVISY (Tyrosine-protein kinase transforming protein Yes (Fragment) OS=Avian sarcoma virus (strain Y73) GN=V-YES PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 2
Query:  245 ENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRV-LAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPD 724
            E+      +G+G +G V+ G        AIK L       E FL +  ++ +L+H+  V L  Y V     + +  EF + GSL D L  ++G      G  L   Q V +A   A G+ Y+      + IHRD++++N+L+ D+ V KIADF L+    D
Sbjct:  265 ESLRLEVKLGQGCFGEVWMGTWNGTTKVAIKTLKLGTMMPEAFLQEAQIMKKLRHDKLVPL--YAVVSEEPIYIVTEFMTKGSLLDFL--KEG-----EGKFLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIED 413          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: SPKA_DICDI (Stress-activated protein kinase alpha OS=Dictyostelium discoideum GN=spkA-1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 54/171 (31.58%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  203 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAA--AIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            EV  I+ +EL E TE       +G GS G+VY G+ +    A   +K +  SK+  EEF  +  ++S ++ ++ V   G  ++     +  E  S GSL+ ++       G        W++  + A+   +G+E LH K DP I+HRD+KS N+L+ D    K+ DF LS
Sbjct:  342 EVNIINDNEL-EYTEK------LGAGSSGKVYKGLYRGKEVAIKVLKSMTESKEI-EEFKKEFQIMSAIRSKHVVHFYGAVLE-PKLCMVMENCSRGSLYHVMDNNSLDIG--------WERTFRFAIETVRGIECLH-KWDPPIVHRDLKSLNLLVNDKWEIKVCDFGLS 494          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: ROS_MOUSE (Proto-oncogene tyrosine-protein kinase ROS OS=Mus musculus GN=Ros1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 53/171 (30.99%), Postives = 77/171 (45.03%), Query Frame = 2
Query:  245 ENFGTNALIGEGSYGRVYYG----ILKSGHA---AAIKKLDASKQPDE--EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDD-----VAKIADFDLSNQ 715
            E      L+G G++G VY G    IL  G      A+K L       E  EFL +  ++S+  H N ++ LG C+ G  + +  E    G L   L   +G      GP L+    V++ V  +KG  YL +    H IHRD+ + N L+   D     V KI DF L+ +
Sbjct: 1936 EKLSLRLLLGSGAFGEVYEGTAIDILGVGSGEIKVAVKTLKKGSTDQEKIEFLKEAHLMSKFNHPNILKQLGVCLLGEPQYIILELMEGGDLLSYLRKARGT--TFHGPSLTLLDLVELCVDISKGCVYLEQM---HFIHRDLAARNCLVSVKDYTSPRVVKIGDFGLARE 2101          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: NTRK1_RAT (High affinity nerve growth factor receptor OS=Rattus norvegicus GN=Ntrk1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  269 IGEGSYGRVY----YGILKSGHA--AAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDIL--HG-----RKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            +GEG++G+V+    Y +L        A+K L + S+   ++F  +  +++ L+H++ V+  G C +G   ++ +E+  +G L+  L  HG       G +   PGP L   Q + +A   A G+ YL   A  H +HRD+ + N L+    V KI DF +S
Sbjct:  519 LGEGAFGKVFLAECYNLLNDQDKMLVAVKALKETSENARQDFHREAELLTMLQHQHIVRFFGVCTEGGPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGP-LGLGQLLAVASQVAAGMVYL---ASLHFVHRDLATRNCLVGQGLVVKIGDFGMS 675          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: NTRK1_HUMAN (High affinity nerve growth factor receptor OS=Homo sapiens GN=NTRK1 PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 48/161 (29.81%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  269 IGEGSYGRVY----YGIL--KSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDIL--HG-----RKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            +GEG++G+V+    + +L  +     A+K L +AS+   ++F  +  +++ L+H++ V+  G C +G   ++ +E+  +G L+  L  HG       G +   PGP L   Q + +A   A G+ YL   A  H +HRD+ + N L+    V KI DF +S
Sbjct:  516 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGP-LGLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMS 672          
The following BLAST results are available for this feature:
BLAST of FC931356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TESK1_HUMAN8.495e-1228.40Dual specificity testis-specific protein kinase 1 ... [more]
ROS_RAT8.495e-1230.41Proto-oncogene tyrosine-protein kinase ROS OS=Ratt... [more]
FRK_RAT8.495e-1225.73Tyrosine-protein kinase FRK OS=Rattus norvegicus G... [more]
YSK4_HUMAN1.109e-1129.61SPS1/STE20-related protein kinase YSK4 OS=Homo sap... [more]
YES_CHICK1.109e-1131.06Tyrosine-protein kinase Yes OS=Gallus gallus GN=YE... [more]
YES_AVISY1.109e-1131.06Tyrosine-protein kinase transforming protein Yes (... [more]
SPKA_DICDI1.109e-1131.58Stress-activated protein kinase alpha OS=Dictyoste... [more]
ROS_MOUSE1.109e-1130.99Proto-oncogene tyrosine-protein kinase ROS OS=Mus ... [more]
NTRK1_RAT1.109e-1129.81High affinity nerve growth factor receptor OS=Ratt... [more]
NTRK1_HUMAN1.109e-1129.81High affinity nerve growth factor receptor OS=Homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34104C03EF PostHarvP1 Citrus clementina cDNA clone C34104C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931356 ID=FC931356; Name=FC931356; organism=Citrus clementina; type=EST; length=745bp
GATCTCAGCTAGCTTTCATAGAGGGGCATTATTGTGGCAGTGAATCATGA
GCTGCTTCGGCTGTTGTGAAGAAGATGATATGCATAAAGCTGCTGACAAT
GGCAATGCATACATGGTTAAAAGTTCAGCAGGAACTGATGGAGCCTATCA
TGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTGTGAAAGTCCAGCCCA
TTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAGGAAATTACTGAGAAC
TTTGGGACTAATGCTTTGATTGGAGAAGGTTCATATGGAAGAGTATATTA
TGGGATTCTTAAAAGTGGACATGCTGCAGCAATAAAAAAGTTGGATGCCA
GCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTTTCCATGGTATCAAGG
TTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTATTGTGTTGATGGGAC
TTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATGGATCTCTTCATGATA
TTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAGCCTGGTCCTGTTTTG
TCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGCTGCGAAAGGGCTTGA
ATACTTGCATGAGAAGGCAGATCCTCATATTATCCATCGCGATATTAAGT
CCAGCAATGTACTAATTTTTGATGATGATGTAGCAAAGATTGCCGACTTT
GATTTATCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCATTCT
back to top