FC931356

Overview
NameFC931356
Unique NameFC931356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 82/228 (35.96%), Postives = 120/228 (52.63%), Query Frame = 2
Query:   59 GCCEEDDMHKAADNGNAYMVKSSAGTDG-------AYHASEAAPKGAQAVKVQPIE-VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEE---FLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            G   + + H+   NGNA  +   +           A   +EA+ K   +    P+  V   +V  L++ T +F    LIG G  G VY   L  G   A++KLD      EE   FL  V+ + R++H N VQL+G+C + + R+L +E+  NG+LHD+LH    +K       LSW  RV+IA+ AAK LEYLHE  DP  IHR+ KS+N+L+ DD    ++D  L+
Sbjct:  406 GSESKQESHEIDMNGNAMDLMHPSSIPPIKRVIAKATEPAEASLKRTTSKSHGPLTAVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDDRLKIE-----LSWNVRVRIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLA 628          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: RLK7_ARATH (Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 65/162 (40.12%), Postives = 101/162 (62.35%), Query Frame = 2
Query:  227 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            E+ ++T+NF    ++G+G +G VY+G +K     A+K L  +S Q  +EF A+V ++ R+ H N V L+GYC +G    L YEF  NG L   L G+ G        +++W  R++IA+ AA GLEYLH    P ++HRD+K++N+L+ ++  AK+ADF LS
Sbjct:  558 EVVQVTKNF--QRVLGKGGFGMVYHGTVKGSEQVAVKVLSQSSTQGSKEFKAEVDLLLRVHHTNLVSLVGYCCEGDYLALVYEFLPNGDLKQHLSGKGG------NSIINWSIRLRIALEAALGLEYLHIGCTPPMVHRDVKTANILLDENFKAKLADFGLS 711          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: ACCR2_ARATH (Serine/threonine-protein kinase-like protein CCR2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 2
Query:  203 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK---QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDL 706
            E     + ELK+ T  F     +G GS+G VY  +L  G   A+K+ +A+      +  F +++ ++ +++H N V LLGYC +   R+L YE+  +G+LHD LHG            L W  R+KI + AA+GL+YLH + DP IIHRD+K+SN+L+  +  A+IADF L
Sbjct:  503 ETKIFRLSELKDATHGFKEFNELGRGSFGFVYKAVLSDGIHVAVKRANAATIIHSNNRGFESELEILCKIRHNNIVNLLGYCSEMGERLLVYEYMPHGTLHDHLHGDLSQ--------LDWSMRLKIMLQAARGLDYLHNEVDPPIIHRDVKTSNILLDGEMCARIADFGL 665          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28
Identity = 66/175 (37.71%), Postives = 107/175 (61.14%), Query Frame = 2
Query:  188 KVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            K + +E+P I ++ + + TENF +   +G+G +G VY G L  G   A+K+L   S Q  +EF+ +V++++RL+H N VQ+LG C++G  ++L YE+  N SL   L G+           L+W +R  I  G A+GL YLH+ +   IIHRD+K SN+L+  + + KI+DF ++
Sbjct:  507 KFEELELPLIEMETVVKATENFSSCNKLGQGGFGIVYKGRLLDGKEIAVKRLSKTSVQGTDEFMNEVTLIARLQHINLVQVLGCCIEGDEKMLIYEYLENLSLDSYLFGK------TRRSKLNWNERFDITNGVARGLLYLHQDSRFRIIHRDLKVSNILLDKNMIPKISDFGMA 675          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: Y2899_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.796e-28
Identity = 75/208 (36.06%), Postives = 109/208 (52.40%), Query Frame = 2
Query:  146 YHASEAAPKGAQAVKVQPIEVPA---------------ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAP 721
            +   +A+P    A    P+  P                 +  E++E+T NF  +  +GEG +G VY+G +      A+K L  +S Q  + F A+V ++ R+ H N V L+GYC +G    L YE+  NG L   L G+ G      G VLSW+ R+KI + AA GLEYLH    P ++HRDIK++N+L+     AK+ADF LS   P
Sbjct:  529 FRKKKASPSNLHAPPSMPVSNPGHNSQSESSFTSKKIRFTYSEVQEMTNNF--DKALGEGGFGVVYHGFVNVIEQVAVKLLSQSSSQGYKHFKAEVELLMRVHHINLVSLVGYCDEGEHLALIYEYMPNGDLKQHLSGKHG------GFVLSWESRLKIVLDAALGLEYLHTGCVPPMVHRDIKTTNILLDQHLQAKLADFGLSRSFP 728          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.796e-28
Identity = 67/167 (40.12%), Postives = 97/167 (58.08%), Query Frame = 2
Query:  227 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPD 724
            ELK  T++F  +  +GEG +G VY G L  G   A+K L   S+Q   +F+A++  +S + H N V+L G C +G  R+L YE+  NGSL   L G K +        L W  R +I +G A+GL YLHE+A   I+HRD+K+SN+L+    V +I+DF L+    D
Sbjct:  686 ELKSATQDFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLH-------LDWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLDSRLVPQISDFGLAKLYDD 845          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.957e-28
Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = 2
Query:  218 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            S  E++  T NF    ++G+G +G VY G L +G   A+K+L D     + +F  +V M+    H N ++L G+C+    R+L Y +  NGS+ D L    G K     P L W +R+ IA+GAA+GL YLHE+ +P IIHRD+K++N+L+ +   A + DF L+
Sbjct:  289 SFREIQTATSNFSPKNILGQGGFGMVYKGYLPNGTVVAVKRLKDPIYTGEVQFQTEVEMIGLAVHRNLLRLFGFCMTPEERMLVYPYMPNGSVADRLRDNYGEK-----PSLDWNRRISIALGAARGLVYLHEQCNPKIIHRDVKAANILLDESFEAIVGDFGLA 448          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: SIRK_ARATH (Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.957e-28
Identity = 67/162 (41.36%), Postives = 104/162 (64.20%), Query Frame = 2
Query:  227 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLS 709
            E+  IT NF    +IG+G +G+VY+G++ +G   A+K L + S Q  +EF A+V ++ R+ H N   L+GYC +    VL YE+ +N +L D L G++         +LSW++R+KI++ AA+GLEYLH    P I+HRD+K +N+L+ +   AK+ADF LS
Sbjct:  568 EVVNITNNF--ERVIGKGGFGKVYHGVI-NGEQVAVKVLSEESAQGYKEFRAEVDLLMRVHHTNLTSLVGYCNEINHMVLIYEYMANENLGDYLAGKRSF-------ILSWEERLKISLDAAQGLEYLHNGCKPPIVHRDVKPTNILLNEKLQAKMADFGLS 719          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.957e-28
Identity = 75/181 (41.44%), Postives = 109/181 (60.22%), Query Frame = 2
Query:  212 AISVDELKEITENFGTNALIGEGSYGRVYYGILK----------SGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAP 721
            A + +ELK  T+NF  + L+GEG +G V+ G +           SG   A+K+L     Q  +E+L +V+ + +L H N V L+GYC +G +R+L YEF   GSL + L  R    GAQP   L+W  R+K+AVGAAKGL +LHE A   +I+RD K++N+L+  D  AK++DF L+   P
Sbjct:   73 AFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRR----GAQP---LTWAIRMKVAVGAAKGLTFLHE-AKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGP 245          
BLAST of FC931356 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.474e-28
Identity = 67/166 (40.36%), Postives = 99/166 (59.64%), Query Frame = 2
Query:  227 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAP 721
            E+ ++T NFG   ++GEG +G V +G +      A+K L  +S Q  +EF A+V ++ R+ H N V L+GYC +G    L YEF  NG L   L G+ G       P+++W  R++IA  AA GLEYLH    P ++HRD+K++N+L+ +   AK+ADF LS   P
Sbjct:  574 EVTKMTNNFGR--VVGEGGFGVVCHGTVNGSEQVAVKLLSQSSTQGYKEFKAEVDLLLRVHHTNLVSLVGYCDEGDHLALIYEFVPNGDLRQHLSGKGGK------PIVNWGTRLRIAAEAALGLEYLHIGCTPPMVHRDVKTTNILLDEHYKAKLADFGLSRSFP 731          
The following BLAST results are available for this feature:
BLAST of FC931356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SRF1_ARATH2.225e-2835.96Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
RLK7_ARATH2.225e-2840.12Receptor-like protein kinase At5g59670 OS=Arabidop... [more]
ACCR2_ARATH2.225e-2838.60Serine/threonine-protein kinase-like protein CCR2 ... [more]
SRK6_BRAOE2.906e-2837.71Putative serine/threonine-protein kinase receptor ... [more]
Y2899_ARATH3.796e-2836.06Probable leucine-rich repeat receptor-like protein... [more]
Y1561_ARATH3.796e-2840.12Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH4.957e-2838.18Probable LRR receptor-like serine/threonine-protei... [more]
SIRK_ARATH4.957e-2841.36Senescence-induced receptor-like serine/threonine-... [more]
APK2A_ARATH4.957e-2841.44Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y5596_ARATH6.474e-2840.36Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC34104C03EF PostHarvP1 Citrus clementina cDNA clone C34104C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931356 ID=FC931356; Name=FC931356; organism=Citrus clementina; type=EST; length=745bp
GATCTCAGCTAGCTTTCATAGAGGGGCATTATTGTGGCAGTGAATCATGA
GCTGCTTCGGCTGTTGTGAAGAAGATGATATGCATAAAGCTGCTGACAAT
GGCAATGCATACATGGTTAAAAGTTCAGCAGGAACTGATGGAGCCTATCA
TGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTGTGAAAGTCCAGCCCA
TTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAGGAAATTACTGAGAAC
TTTGGGACTAATGCTTTGATTGGAGAAGGTTCATATGGAAGAGTATATTA
TGGGATTCTTAAAAGTGGACATGCTGCAGCAATAAAAAAGTTGGATGCCA
GCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTTTCCATGGTATCAAGG
TTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTATTGTGTTGATGGGAC
TTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATGGATCTCTTCATGATA
TTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAGCCTGGTCCTGTTTTG
TCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGCTGCGAAAGGGCTTGA
ATACTTGCATGAGAAGGCAGATCCTCATATTATCCATCGCGATATTAAGT
CCAGCAATGTACTAATTTTTGATGATGATGTAGCAAAGATTGCCGACTTT
GATTTATCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCATTCT
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