FC931359
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.739e-27 Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPA-------IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 ++DG+VR + YP GFMDVI + TGE +R++ FT+H I EEA++KL +++ KGG L HD R IR DP K TVK+ I ++L + + G +++ GGRN+GRVG I Sbjct: 72 KIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRI 205 HSP 2 Score: 53.5286 bits (127), Expect = 6.739e-27 Identity = 22/64 (34.38%), Postives = 38/64 (59.38%), Query Frame = 2 Query: 74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265 G +H K L+AP W + + +G + K SPGPH + +PL++ +R+ L YA RE + ++ + Sbjct: 5 GGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAE 68
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.279e-26 Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPAIKVND------TVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 +VDG+VR + YP G MDVI + TGE +R++ + I EEA+YKL +++ KGG L HD R I+ DP V D T+++ I +IL+++ D G +++ +GGRN+GRVG + Sbjct: 72 KVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKV 204 HSP 2 Score: 53.9138 bits (128), Expect = 3.279e-26 Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 2 Query: 74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265 G KH K L AP W + + +A K SPGPH + C PL++ +R+ L YA RE + ++ + Sbjct: 5 GGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISE 68
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.561e-26 Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYP---DPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGG 677 VDGKVR D +P G MDV+S+ +TGEH+R++ + G+ +H I EEA K +++ ++ KG L HD P + TV + + +I++ + F+ G + T G+N+ R G I ++ G Sbjct: 73 VDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDGTNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMG 208 HSP 2 Score: 61.6178 bits (148), Expect = 5.561e-26 Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 +GP +H KRL+APS W +++ + +A + PGPH +R +PL+ +R+ L YA RE + I+ Sbjct: 4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKIL 66
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.075e-25 Identity = 49/134 (36.57%), Postives = 71/134 (52.99%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPA-------IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 +VDG+VR D +P G MDVI + E++R++ RI AEEA+ K+C+++ KGG L HD R IR DP K + + + +ILD+V F+ GV+ + GRN+GRVG I Sbjct: 73 KVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMRIDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRI 206 HSP 2 Score: 55.8398 bits (133), Expect = 2.075e-25 Identity = 22/67 (32.84%), Postives = 41/67 (61.19%), Query Frame = 2 Query: 65 KMRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265 ++ G +H KRL+AP+ W + + +A K PGPH + + +PL++ +R+ L YA RE + ++ + Sbjct: 3 RVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAE 69
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.076e-25 Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = 3 Query: 276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPAIKVNDT------VKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 ++DG+VR D +P G MDVI + +++R++ + I EEA +KLC+++ K G L HD R IR DP V DT +K+ I +ILD+V GV+ + +GGRN+GRVG I Sbjct: 72 KIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKI 204 HSP 2 Score: 53.1434 bits (126), Expect = 2.076e-25 Identity = 21/64 (32.81%), Postives = 39/64 (60.94%), Query Frame = 2 Query: 74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265 G +H K ++AP +W + + + K+SPGPH + LPL++ +R+ L YA G+E + ++ + Sbjct: 5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAE 68
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.704e-25 Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYP---DPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGG 677 VDG+VR D +P G MDV+S+ +TGEH+R++ + G+ +H I EEA K +++ ++ KG L HD P + TV + + +IL+ + F+ G + T G+N+ R G I ++ G Sbjct: 73 VDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMG 208 HSP 2 Score: 60.4622 bits (145), Expect = 2.704e-25 Identity = 24/63 (38.10%), Postives = 41/63 (65.08%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 +GP +H KRL+AP+ W +++ + +A + PGPH +R +PL+ +R+ L YA RE + I+ Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKIL 66
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.704e-25 Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR----TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650 VDG+VR D +P G MDV+S+ +TGEH+R++ + G+ +H I EEA+ K ++ ++ KG L HD ++ D A K + TV + + +I+ + F+ G + T G+N+ R G I Sbjct: 73 VDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKI 199 HSP 2 Score: 60.8474 bits (146), Expect = 2.704e-25 Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 +GP +H KRL+AP+ W + + + +A + SPGPH ++ +PLI +R+ L YA RE + I+ Sbjct: 4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKIL 66
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.519e-25 Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--TIRYPDP------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRER 665 VDG+VR + P G MDV+SL E++R+++D KGR + E + KLCK+K + KGG L HD R I+ DP K DT+ + I +I + F+ G + TGG+++G I ER Sbjct: 73 VDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLK--PTENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIER 207 HSP 2 Score: 57.7658 bits (138), Expect = 3.519e-25 Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 +GP +H KRL+AP W L + + + PG H + + LPL++ +R+ LKYA N RE K I+ Sbjct: 4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKII 66
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.759e-25 Identity = 46/137 (33.58%), Postives = 73/137 (53.28%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVN----DTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGG 677 VDG+VR D +P G MDV+S+ +TGEH+R++ + G+ +H I +EA K +++ ++ KG L HD T A K N TV + + +IL+ + F+ G + T G+N+ R G I +R G Sbjct: 73 VDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDG-TNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMG 208 HSP 2 Score: 60.4622 bits (145), Expect = 7.759e-25 Identity = 24/63 (38.10%), Postives = 41/63 (65.08%), Query Frame = 2 Query: 71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 +GP +H KRL+AP+ W +++ + +A + PGPH +R +PL+ +R+ L YA RE + I+ Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKIL 66
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 8.294e-24 Identity = 43/146 (29.45%), Postives = 74/146 (50.68%), Query Frame = 3 Query: 279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDP------AIKVNDTVKVDI------ATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674 VDG VR + +P G MDV+ + +TG+ +R+V + R V I EEA K+C++K +GG + HD + + DP V D++ +++ + K++D + F+ GV + A GR+ G VG + + +G Sbjct: 76 VDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEG 221 HSP 2 Score: 55.4546 bits (132), Expect = 8.294e-24 Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 2 Query: 74 GPGKHQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259 GP +H KRL+AP W + K G +AP+ PGPH + +PL++ +R+ L YA RE + I+ Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKII 69 The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bpback to top |