FC931359

Overview
NameFC931359
Unique NameFC931359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.739e-27
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPA-------IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            ++DG+VR +  YP GFMDVI +  TGE +R++      FT+H I  EEA++KL +++     KGG   L  HD R   IR  DP         K   TVK+ I   ++L +   + G +++  GGRN+GRVG I
Sbjct:   72 KIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRI 205          

HSP 2 Score: 53.5286 bits (127), Expect = 6.739e-27
Identity = 22/64 (34.38%), Postives = 38/64 (59.38%), Query Frame = 2
Query:   74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265
            G  +H K L+AP  W + + +G +  K SPGPH +   +PL++ +R+ L YA   RE + ++ +
Sbjct:    5 GGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAE 68          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.279e-26
Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPAIKVND------TVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            +VDG+VR +  YP G MDVI +  TGE +R++        +  I  EEA+YKL +++     KGG   L  HD R   I+  DP   V D      T+++ I   +IL+++  D G +++ +GGRN+GRVG +
Sbjct:   72 KVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKV 204          

HSP 2 Score: 53.9138 bits (128), Expect = 3.279e-26
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 2
Query:   74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265
            G  KH K L AP  W + +    +A K SPGPH +  C PL++ +R+ L YA   RE + ++ +
Sbjct:    5 GGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISE 68          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.561e-26
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYP---DPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGG 677
            VDGKVR D  +P G MDV+S+ +TGEH+R++ +  G+  +H I  EEA  K  +++  ++ KG    L  HD      P         + TV + +   +I++ + F+ G  +  T G+N+ R G I   ++   G
Sbjct:   73 VDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDGTNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMG 208          

HSP 2 Score: 61.6178 bits (148), Expect = 5.561e-26
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            +GP +H KRL+APS W +++ +  +A +  PGPH +R  +PL+  +R+ L YA   RE + I+
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKIL 66          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.075e-25
Identity = 49/134 (36.57%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPA-------IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            +VDG+VR D  +P G MDVI +    E++R++          RI AEEA+ K+C+++     KGG   L  HD R   IR  DP         K    + + +   +ILD+V F+ GV+ +   GRN+GRVG I
Sbjct:   73 KVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMRIDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRI 206          

HSP 2 Score: 55.8398 bits (133), Expect = 2.075e-25
Identity = 22/67 (32.84%), Postives = 41/67 (61.19%), Query Frame = 2
Query:   65 KMRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265
            ++ G  +H KRL+AP+ W + +    +A K  PGPH + + +PL++ +R+ L YA   RE + ++ +
Sbjct:    3 RVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAE 69          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.076e-25
Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  276 QVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDPAIKVNDT------VKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            ++DG+VR D  +P G MDVI +    +++R++        +  I  EEA +KLC+++     K G   L  HD R   IR  DP   V DT      +K+ I   +ILD+V    GV+ + +GGRN+GRVG I
Sbjct:   72 KIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKI 204          

HSP 2 Score: 53.1434 bits (126), Expect = 2.076e-25
Identity = 21/64 (32.81%), Postives = 39/64 (60.94%), Query Frame = 2
Query:   74 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQ 265
            G  +H K ++AP +W + +    +  K+SPGPH +   LPL++ +R+ L YA  G+E + ++ +
Sbjct:    5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAE 68          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.704e-25
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYP---DPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGG 677
            VDG+VR D  +P G MDV+S+ +TGEH+R++ +  G+  +H I  EEA  K  +++  ++ KG    L  HD      P         + TV + +   +IL+ + F+ G  +  T G+N+ R G I   ++   G
Sbjct:   73 VDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMG 208          

HSP 2 Score: 60.4622 bits (145), Expect = 2.704e-25
Identity = 24/63 (38.10%), Postives = 41/63 (65.08%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            +GP +H KRL+AP+ W +++ +  +A +  PGPH +R  +PL+  +R+ L YA   RE + I+
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKIL 66          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.704e-25
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR----TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 650
            VDG+VR D  +P G MDV+S+ +TGEH+R++ +  G+  +H I  EEA+ K  ++   ++ KG    L  HD      ++   D A K + TV + +   +I+  + F+ G  +  T G+N+ R G I
Sbjct:   73 VDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKI 199          

HSP 2 Score: 60.8474 bits (146), Expect = 2.704e-25
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            +GP +H KRL+AP+ W + + +  +A + SPGPH ++  +PLI  +R+ L YA   RE + I+
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKIL 66          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.519e-25
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR--TIRYPDP------AIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRER 665
            VDG+VR +   P G MDV+SL    E++R+++D KGR  +     E  + KLCK+K   + KGG   L  HD R   I+  DP        K  DT+ + I   +I   + F+ G +   TGG+++G    I   ER
Sbjct:   73 VDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLK--PTENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIER 207          

HSP 2 Score: 57.7658 bits (138), Expect = 3.519e-25
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            +GP +H KRL+AP  W L +    +  +  PG H + + LPL++ +R+ LKYA N RE K I+
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKII 66          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.759e-25
Identity = 46/137 (33.58%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVN----DTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGG 677
            VDG+VR D  +P G MDV+S+ +TGEH+R++ +  G+  +H I  +EA  K  +++  ++ KG    L  HD  T      A K N     TV + +   +IL+ + F+ G  +  T G+N+ R G I   +R   G
Sbjct:   73 VDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDG-TNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMG 208          

HSP 2 Score: 60.4622 bits (145), Expect = 7.759e-25
Identity = 24/63 (38.10%), Postives = 41/63 (65.08%), Query Frame = 2
Query:   71 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            +GP +H KRL+AP+ W +++ +  +A +  PGPH +R  +PL+  +R+ L YA   RE + I+
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKIL 66          
BLAST of FC931359 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.294e-24
Identity = 43/146 (29.45%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  279 VDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART--IRYPDP------AIKVNDTVKVDI------ATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDG 674
            VDG VR +  +P G MDV+ + +TG+ +R+V +   R  V  I  EEA  K+C++K     +GG   +  HD +   +   DP         V D++ +++       + K++D + F+ GV + A  GR+ G VG +   +  +G
Sbjct:   76 VDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEG 221          

HSP 2 Score: 55.4546 bits (132), Expect = 8.294e-24
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 2
Query:   74 GPGKHQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIM 259
            GP +H KRL+AP  W +  K  G +AP+  PGPH +   +PL++ +R+ L YA   RE + I+
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKII 69          
The following BLAST results are available for this feature:
BLAST of FC931359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_HYPBU6.739e-2738.8130S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_STAMF3.279e-2636.8430S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_PYRHO5.561e-2631.6230S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_IGNH42.075e-2536.5730S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_DESK12.076e-2536.8430S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_PYRAB2.704e-2531.6230S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_PYRKO2.704e-2533.5930S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_METJA3.519e-2535.0430S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_PYRFU7.759e-2533.5830S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METKA8.294e-2429.4530S ribosomal protein S4e OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionC34104C07EF PostHarvP1 Citrus clementina cDNA clone C34104C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931359 ID=FC931359; Name=FC931359; organism=Citrus clementina; type=EST; length=679bp
CTTCTCGGCTTGAGCATTCTCTTTCGACACTCCGACCACCTAACCTTCAG
TCGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGCACCAGAAGCGCCTC
AGCGCGCCCTCGCACTGGCTCTTGGACAAAATGTCCGGAACCTACGCGCC
CAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTGCCTTCCCCTGATTG
TCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACGGTCGCGAGGTCAAG
GCCATCATGATGCAGCGTCTGGTCACAGGTTGACGGCAAGGTCCGCACCG
ACACCACCTACCCCGCTGGATTCATGGACGTCATCTCCCTCGAGAAGACC
GGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTCGCTTCACCGTCCA
CCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGCAAGGTCAAGCGTG
TTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGCGA
ACCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGGCCACTGGTGGTCGCAACATGGGTCGTGTTGGTGTCATC
ACTCACCGTGAGCGTCACGACGGTGGTTT
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