FC931361

Overview
NameFC931361
Unique NameFC931361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.115e-58
Identity = 107/170 (62.94%), Postives = 139/170 (81.76%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRK 673
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D+ +  MLVGNK DL  +R V T+E ++ AE   L F+ETSALDSTNV+ AF+ ++ EI + VS+K
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 226.483 bits (576), Expect = 1.115e-58
Identity = 107/170 (62.94%), Postives = 139/170 (81.76%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRK 673
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D+ +  MLVGNK DL  +R V T+E ++ AE   L F+ETSALDSTNV+ AF+ ++ EI + VS+K
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.115e-58
Identity = 107/170 (62.94%), Postives = 139/170 (81.76%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRK 673
            YLFK+V+IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+++DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI +  T++++ RWL EL+ H+D+ +  MLVGNK DL  +R V T+E ++ AE   L F+ETSALDSTNV+ AF+ ++ EI + VS+K
Sbjct:   10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.534e-58
Identity = 109/175 (62.29%), Postives = 141/175 (80.57%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSD 688
            Y+FK+V+IGDSAVGK+ +L+R+ARNEF+  SKATIGVEFQT+++ I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R TFD I RWL+EL+ H+D  +  ML GNK DLE  R V TE+ K  A+ EGLFF+ETSA+++T +++AF  V+ EI   V++K L +D
Sbjct:   14 YVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAAD 188          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.991e-57
Identity = 106/174 (60.92%), Postives = 140/174 (80.46%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNS 685
            YLFK V+IGDS VGKSNLL R+ RNEFN  SK+TIGVEF T+++ +D K++KAQIWDTAGQER+RA+TSAYYRGAVGALIVYDIT++++FD++ RWL EL+ H+D+ +  MLVGNK DL  +R VSTEE ++ A    L F+ETSA+D++NV+ AF+ V+ EI + VS + L +
Sbjct:    9 YLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEA 182          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.154e-55
Identity = 101/172 (58.72%), Postives = 138/172 (80.23%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVL 679
            YLFK+V+IGDS VGKSN+LSR+ RNEF   SK+TIGVEF T++++++GK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+ YDIT+R TFD++ RWL EL+ H D+ +  +L GNK DL+ +R VS ++ ++L + EGL F+ETSAL++ NV  AF+ ++ +I   +S+K L
Sbjct:   11 YLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKAL 182          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.842e-54
Identity = 105/168 (62.50%), Postives = 133/168 (79.17%), Query Frame = 2
Query:  167 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSR 670
            LFKIV+IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T+++EIDGK +KAQIWDTAGQER+RA+TSAYYRGAVGALIVYDI++ +++++ + WL EL+ ++D  VA  L+GNK DL  +R V TEE K+ A+   L F ETSAL+S NV  AFE +I  I Q VS+
Sbjct:   13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 99/169 (58.58%), Postives = 135/169 (79.88%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSR 670
            YL+KIV+IGDS VGKSNLLSR+ RNEF+  +K+TIGVEF T++++ +GK +KAQ+WDTAGQER+RA+TSAYYRGAVGAL+VYDI ++ T+ S+ RW+ EL+ ++D  +  MLVGNK DL  +R VST+E K  +E   L F+ETSALDS+NV+ AF+ ++ +I   +SR
Sbjct:   12 YLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSR 180          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.406e-53
Identity = 101/174 (58.05%), Postives = 133/174 (76.44%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNS 685
            ++FK+V+IG+S VGK+NLLSR+ RNEF+  S+ TIGVEF T+++ +    VKAQIWDTAG ER+RA+TSAYYRGAVGAL+V+D+T+  T+  + RWL EL  H++ T+  MLVGNK DL   R V TEE +  AE  GL F+ETSALDSTNV+ AFE V++EI   VS+++ NS
Sbjct:   11 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNS 184          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 103/170 (60.59%), Postives = 133/170 (78.24%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRK 673
            YLFKIVIIGDSAVGKSNLL+R+ RNEF   +KATIGV+F T+S+EID K + AQ WDTAGQERFRAVTS YYRGAVGA+IVYDIT + +F +++RWL+EL+  ++  +  M+VGNK DLE  R V T+E ++ AE+  + F+ETSAL+STNV  +FE ++ +I   VS K
Sbjct:    9 YLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSK 178          
The following BLAST results are available for this feature:
BLAST of FC931361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_MOUSE1.115e-5862.94Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN1.115e-5862.94Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN1.115e-5862.94Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11C_TOBAC5.534e-5862.29Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
YPT3_SCHPO7.991e-5760.92GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11A_TOBAC1.154e-5558.72Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
YPT31_YEAST2.842e-5462.50GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11A_DICDI1.842e-5358.58Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB25_RABIT2.406e-5358.05Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RB11C_DICDI4.104e-5360.59Ras-related protein Rab-11C OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionC34104C09EF PostHarvP1 Citrus clementina cDNA clone C34104C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931361 ID=FC931361; Name=FC931361; organism=Citrus clementina; type=EST; length=711bp
GATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTATTGTT
ATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTCCATTC
AAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGAGGAGG
AGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTCGGCGG
TGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCAATCCT
CACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATGGAGAT
CGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCAGGAGC
GCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTGCTCTC
ATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCTCGCTG
GCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGATGCTGG
TCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTGAAGAA
GGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACTTCTGC
ATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCGAGAGA
TTTNACAGCATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACAAAGCT
GAATTATCTCT
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