FC931361

Overview
NameFC931361
Unique NameFC931361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.911e-42
Identity = 84/167 (50.30%), Postives = 117/167 (70.06%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHV 664
            Y+FK +IIGD  VGKS LL ++   +F      TIGVEF T+ +E+ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + +  ++     +L+GNK DLE+ R+V+ EE K  AE  GL F+E SA    NV++AF    ++I Q++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.911e-42
Identity = 84/167 (50.30%), Postives = 117/167 (70.06%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHV 664
            Y+FK +IIGD  VGKS LL ++   +F      TIGVEF T+ +E+ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + +  ++     +L+GNK DLE+ R+V+ EE K  AE  GL F+E SA    NV++AF    ++I Q++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.911e-42
Identity = 84/167 (50.30%), Postives = 117/167 (70.06%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHV 664
            Y+FK +IIGD  VGKS LL ++   +F      TIGVEF T+ +E+ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + +  ++     +L+GNK DLE+ R+V+ EE K  AE  GL F+E SA    NV++AF    ++I Q++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.911e-42
Identity = 84/167 (50.30%), Postives = 117/167 (70.06%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHV 664
            Y+FK +IIGD  VGKS LL ++   +F      TIGVEF T+ +E+ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + +  ++     +L+GNK DLE+ R+V+ EE K  AE  GL F+E SA    NV++AF    ++I Q++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 172.555 bits (436), Expect = 1.911e-42
Identity = 84/167 (50.30%), Postives = 117/167 (70.06%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHV 664
            Y+FK +IIGD  VGKS LL ++   +F      TIGVEF T+ +E+ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + +  ++     +L+GNK DLE+ R+V+ EE K  AE  GL F+E SA    NV++AF    ++I Q++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.911e-42
Identity = 84/167 (50.30%), Postives = 117/167 (70.06%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHV 664
            Y+FK +IIGD  VGKS LL ++   +F      TIGVEF T+ +E+ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + +  ++     +L+GNK DLE+ R+V+ EE K  AE  GL F+E SA    NV++AF    ++I Q++
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.257e-42
Identity = 78/163 (47.85%), Postives = 117/163 (71.78%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 652
            +LFK+++IGDS VGK+ L+ R+A + FN    +TIG++F+ +++EI+GK +K Q+WDTAGQERF+ +T+AYYRGA+G ++VYDIT   +F++I  W+  +K ++   V R+L+GNKCD+E+ R V  E+   LA   G+ F ETSA  S NV  AF  + R+I
Sbjct:    7 HLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.257e-42
Identity = 77/163 (47.24%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 652
            +LFK+++IGDS VGK+ L+ R+A + FN    +TIG++F+ ++++I+GK++K Q+WDTAGQERF+ +T+AYYRGA+G ++VYDIT   +F++I  W+  +K ++   V R+L+GNKCD+E+ R V  E+   LA   G+ F ETSA  S NV  AF  + R+I
Sbjct:    7 HLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.257e-42
Identity = 77/163 (47.24%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 652
            +LFK+++IGDS VGK+ L+ R+A + FN    +TIG++F+ ++++I+GK++K Q+WDTAGQERF+ +T+AYYRGA+G ++VYDIT   +F++I  W+  +K ++   V R+L+GNKCD+E+ R V  E+   LA   G+ F ETSA  S NV  AF  + R+I
Sbjct:    7 HLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of FC931361 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.560e-42
Identity = 81/182 (44.51%), Postives = 127/182 (69.78%), Query Frame = 2
Query:  164 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIXQHVSRKVLNSDSYKAELS 709
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E+DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+  ++   V ++LVGNKCDL + + V     K  A++ G+ F+ETSA ++TNV+ AF  +  EI + +     +  S K+ ++
Sbjct:    7 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVN 188          
The following BLAST results are available for this feature:
BLAST of FC931361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_RAT1.911e-4250.30Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.911e-4250.30Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG1.911e-4250.30Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE1.911e-4250.30Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN1.911e-4250.30Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK1.911e-4250.30Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB13_MESAU4.257e-4247.85Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB13_HUMAN4.257e-4247.24Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN4.257e-4247.24Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB1_DISOM5.560e-4244.51Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34104C09EF PostHarvP1 Citrus clementina cDNA clone C34104C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931361 ID=FC931361; Name=FC931361; organism=Citrus clementina; type=EST; length=711bp
GATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTATTGTT
ATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTCCATTC
AAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGAGGAGG
AGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTCGGCGG
TGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCAATCCT
CACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATGGAGAT
CGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCAGGAGC
GCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTGCTCTC
ATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCTCGCTG
GCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGATGCTGG
TCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTGAAGAA
GGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACTTCTGC
ATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCGAGAGA
TTTNACAGCATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACAAAGCT
GAATTATCTCT
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