FC931468

Overview
NameFC931468
Unique NameFC931468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6_PIG (COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 50/208 (24.04%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTAXKGLDARLREIRGYL 712
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A K L +R++ I  Y+
Sbjct:   37 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 238          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6_MOUSE (COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 50/208 (24.04%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTAXKGLDARLREIRGYL 712
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A K L +R++ I  Y+
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 239          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6_HUMAN (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 50/208 (24.04%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTAXKGLDARLREIRGYL 712
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A K L +R++ I  Y+
Sbjct:   41 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 242          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: CSN6_BOVIN (COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 50/208 (24.04%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  101 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTAXKGLDARLREIRGYL 712
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A K L +R++ I  Y+
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 239          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = 2
Query:   83 SRPIEKVIVHPLVLLSIVDNYNRVAKD-TRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDI----------HQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL 601
            SR I  V VHP+ L SI+D+Y R  +D ++ RV+G LLG+  +  V+V N++AVP  E  +DP    LD  +H  M  +  R+   E V+GWYST  +L  N   I          HQ  H      + +  +V  +  G+  + Y  V  +     +     F+ +P+ +     E+  + HL
Sbjct:   27 SRSITAVKVHPVALFSILDHYLR--RDVSQPRVIGTLLGTRSESEVEVRNAFAVPHGES-QDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSALIQDHYSRETAPHQAIH------LTLNTNVADEANGLGVQCY--VSALLGAMAKPEDCAFLSLPTHLLMSTPEQTALRHL 199          
BLAST of FC931468 vs. ExPASy Swiss-Prot
Match: EI3F2_DROAN (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 2
Query:   98 KVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGV 592
            KV++ PLVL  I+D+Y R  KD   +++G LLG S    + ++N + V   ++  D     LD  Y   M  + +    +E V+GW+STG  +  + L +H  +     +  P+ +++D   K   + T+ Y  VE      T+    +F  VP E+A+   E + +
Sbjct:   10 KVVLQPLVLFQIIDSYERRPKDA-TQIIGTLLGRSNGKEITITNCFTV-LHKEHPDSARIDLDLGYANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDYYSRECSDGQPLHLLVDATLKGQRLSTRLYCGVEMGVPGGTK--GLMFSLVPLEMASDSAEMVAL 172          
The following BLAST results are available for this feature:
BLAST of FC931468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CSN6_PIG3.192e-1324.04COP9 signalosome complex subunit 6 OS=Sus scrofa G... [more]
CSN6_MOUSE3.192e-1324.04COP9 signalosome complex subunit 6 OS=Mus musculus... [more]
CSN6_HUMAN3.192e-1324.04COP9 signalosome complex subunit 6 OS=Homo sapiens... [more]
CSN6_BOVIN4.168e-1324.04COP9 signalosome complex subunit 6 OS=Bos taurus G... [more]
EIF3F_MALGO5.444e-1330.43Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROAN3.901e-1128.14Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34105D11EF PostHarvP1 Citrus clementina cDNA clone C34105D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931468 ID=FC931468; Name=FC931468; organism=Citrus clementina; type=EST; length=717bp
AAGTACAGACTACAGAGAGCATCAGTGACAACAAACACAGAGAGATTCGA
ATATGGACGTGATAAAGACGCAGCAAATTTCATCGAGACCCATAGAGAAG
GTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATTACAACCG
CGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAGCT
CCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCCTTTTGAG
GAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACTACCATGA
ATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCATGTCGTAG
GTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGACATTCAC
CAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTATTGATGT
CCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGATGTTGAGG
AGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTACACGTG
CCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGGAGCACTT
GCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAATGAGGTCA
CTGGAAAACTTACAGCCCNTAAGGGTCTGGATGCTCGTTTGCGTGAGATC
CGTGGTTACCTTGACCT
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