FC931469

Overview
NameFC931469
Unique NameFC931469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.169e-36
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 1
Query:  364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            FDP APPPF+LA+IR  IPKHCWVKDP +S+SY                +L++W+ +PLYWA QGTMFWA+FVLGHDCGHGSFS+   LN+VVGH+LHS+I
Sbjct:   22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAI 122          

HSP 2 Score: 26.5646 bits (57), Expect = 5.169e-36
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYHGWRI+
Sbjct:  123 LVPYHGWRIS 132          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 32/105 (30.48%), Postives = 51/105 (48.57%), Query Frame = 1
Query:  370 PGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLN------NWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            P   PPF +  ++ AIP HC+ +    S SY                Y +      + + WP+YW  QG +   ++V+ H+CGH +FS    ++ VVG  LHS++
Sbjct:   30 PNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFYIATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTL 134          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.230e-11
Identity = 30/102 (29.41%), Postives = 48/102 (47.06%), Query Frame = 1
Query:  382 PPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNN-------WVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            P F + +IR  IP HC+ +   + + +                 ++        ++ WP YW  QG +   ++VL H+CGH SFS    LN+ VG +LHS +
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSML 137          

HSP 2 Score: 24.2534 bits (51), Expect = 3.230e-11
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYH WRI+
Sbjct:  138 LVPYHSWRIS 147          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 3.230e-11
Identity = 30/102 (29.41%), Postives = 48/102 (47.06%), Query Frame = 1
Query:  382 PPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNN-------WVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            P F + +IR  IP HC+ +   + + +                 ++        ++ WP YW  QG +   ++VL H+CGH SFS    LN+ VG +LHS +
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSML 137          

HSP 2 Score: 24.2534 bits (51), Expect = 3.230e-11
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYH WRI+
Sbjct:  138 LVPYHSWRIS 147          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 34/104 (32.69%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  370 PGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXX-YLN------NWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHS 660
            P   PPF + D++ AIP HC+ +   +S SY                 Y +      +++ WPLYWA QG +   ++V+ H+CGH +FS+   L+  VG + HS
Sbjct:   25 PCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHS 128          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 33/104 (31.73%), Postives = 52/104 (50.00%), Query Frame = 1
Query:  370 PGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXX-------YLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHS 660
            P   PPF + +++ AIP HC+ +   +S SY                       +  ++V WPLYWA QG +   ++V+ H+CGH +FS+   L+  VG + HS
Sbjct:   25 PCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHS 128          
The following BLAST results are available for this feature:
BLAST of FC931469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
FAD3E_TOBAC5.169e-3661.39Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN1.744e-1130.48Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORIS3.230e-1129.41Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP3.230e-1129.41Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD6E_ARATH3.886e-1132.69Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU8.658e-1131.73Omega-6 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC34105D12EF PostHarvP1 Citrus clementina cDNA clone C34105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931469 ID=FC931469; Name=FC931469; organism=Citrus clementina; type=EST; length=708bp
GACAATTCTTTGACACCTATCTTCTCTCTCTCTAACTCTTTGAGAGGATT
TTTCTGAGACCCAATGGCGAGTTGGGTTCTTTCAGAATGTGGTTTAAAGC
CTCTGCCTCATATTTTTCCGAGGCCAAGGACTGGAATCAATCCCTCAAAG
GCCAGGTTTTTGCACTCAAAAAAGAGTTTAACAGATCTAAAGCTCCCATC
AGTTAAATGTTCGGGTGATTTTTCTAGAGACAAGAACTGGGGTCTTAAAG
TTAGTGCTCCACTGAGGGTGGCACCACTTGAGGGGGAGGATGAAGAAGAG
AGAATCAACGGTGTTAATGGGATTGGAAATAACAAAGGAGTCGAAGAAGA
AGAGGGATCTGAATTTGATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTG
ATATTAGAGCTGCTATTCCAAAGCATTGTTGGGTTAAGGATCCTTGGAAG
TCTATGAGCTATGTTGTTAGAGATGTTGTGGTGGTTTTTGCCTTGGCTGC
TGCTGCTGCTTATTTGAACAATTGGGTTGTTTGGCCTTTGTACTGGGCTG
CTCAGGGAACCATGTTTTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGT
CATGGAAGCTTTTCAAATGATCACAAGTTGAATAGTGTGGTGGGGCATCT
GCTGCATTCTTCAATCTGGTTCCTTATCATGGATGGAGAATAGCCCAGGA
CTCATCAT
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