FC931469
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 5.169e-36 Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 1 Query: 364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 FDP APPPF+LA+IR IPKHCWVKDP +S+SY +L++W+ +PLYWA QGTMFWA+FVLGHDCGHGSFS+ LN+VVGH+LHS+I Sbjct: 22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAI 122 HSP 2 Score: 26.5646 bits (57), Expect = 5.169e-36 Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYHGWRI+ Sbjct: 123 LVPYHGWRIS 132
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11 Identity = 32/105 (30.48%), Postives = 51/105 (48.57%), Query Frame = 1 Query: 370 PGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLN------NWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 P PPF + ++ AIP HC+ + S SY Y + + + WP+YW QG + ++V+ H+CGH +FS ++ VVG LHS++ Sbjct: 30 PNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFYIATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTL 134
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.230e-11 Identity = 30/102 (29.41%), Postives = 48/102 (47.06%), Query Frame = 1 Query: 382 PPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNN-------WVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 P F + +IR IP HC+ + + + + ++ ++ WP YW QG + ++VL H+CGH SFS LN+ VG +LHS + Sbjct: 36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSML 137 HSP 2 Score: 24.2534 bits (51), Expect = 3.230e-11 Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYH WRI+ Sbjct: 138 LVPYHSWRIS 147
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2) HSP 1 Score: 63.929 bits (154), Expect = 3.230e-11 Identity = 30/102 (29.41%), Postives = 48/102 (47.06%), Query Frame = 1 Query: 382 PPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNN-------WVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 P F + +IR IP HC+ + + + + ++ ++ WP YW QG + ++VL H+CGH SFS LN+ VG +LHS + Sbjct: 36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLFLAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSML 137 HSP 2 Score: 24.2534 bits (51), Expect = 3.230e-11 Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYH WRI+ Sbjct: 138 LVPYHSWRIS 147
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11 Identity = 34/104 (32.69%), Postives = 53/104 (50.96%), Query Frame = 1 Query: 370 PGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXX-YLN------NWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHS 660 P PPF + D++ AIP HC+ + +S SY Y + +++ WPLYWA QG + ++V+ H+CGH +FS+ L+ VG + HS Sbjct: 25 PCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHS 128
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11 Identity = 33/104 (31.73%), Postives = 52/104 (50.00%), Query Frame = 1 Query: 370 PGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXX-------YLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHS 660 P PPF + +++ AIP HC+ + +S SY + ++V WPLYWA QG + ++V+ H+CGH +FS+ L+ VG + HS Sbjct: 25 PCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHS 128 The following BLAST results are available for this feature:
BLAST of FC931469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931469 ID=FC931469; Name=FC931469; organism=Citrus clementina; type=EST; length=708bpback to top |