FC931478

Overview
NameFC931478
Unique NameFC931478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.735e-56
Identity = 101/177 (57.06%), Postives = 133/177 (75.14%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYN-KVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKLYN ++P NGL+LY G ++ ++G  EKK TIDF+P+R IN +LY+CDNKFHT  L +LL  DDKFGFI++DGNGTLFGTL GNT+EVLHKFSVDLP+
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGTLFGTLQGNTKEVLHKFSVDLPK 178          

HSP 2 Score: 29.6462 bits (65), Expect = 3.735e-56
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKH RGGQSALRFA
Sbjct:  178 KKHRRGGQSALRFA 191          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.406e-55
Identity = 101/177 (57.06%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYN-KVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKLYN ++P NGL+LY G ++ ++G  EKK TIDF+P+R IN +LY+CDNKFHT  L +LL  DDKFGFI++DGNG LFGTL GNTREVLHKFSVDLP+
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGALFGTLQGNTREVLHKFSVDLPK 178          

HSP 2 Score: 28.4906 bits (62), Expect = 1.406e-55
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKH RGGQSALRF+
Sbjct:  178 KKHRRGGQSALRFS 191          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.803e-53
Identity = 92/151 (60.93%), Postives = 118/151 (78.15%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            RG+GTSM+SLI+PP+ Q++  TK++ DEF  A+NIK RVNRQSV  A+ SA QRLKLY + P NGL+LY G ++ ++GKE K+ IDFEP++PIN SLY CD+KFH D L  LLE+D  FGFIVMDG G L+  L GNT+ VL+KFSV+LP+
Sbjct:   27 RGSGTSMVSLIIPPKKQINDSTKLISDEFSKATNIKDRVNRQSVQDAMVSALQRLKLYQRTPNNGLILYCGKVLNEEGKEIKLLIDFEPYKPINTSLYFCDSKFHVDELGSLLETDPPFGFIVMDGQGALYANLQGNTKTVLNKFSVELPK 177          

HSP 2 Score: 30.4166 bits (67), Expect = 4.803e-53
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQS++RFA
Sbjct:  177 KKHGRGGQSSVRFA 190          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.671e-51
Identity = 90/151 (59.60%), Postives = 120/151 (79.47%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +G+GTSMI+LI+  +DQ++   +ML +E G ASNIKSRV RQ+V  A+TS  ++LKLYNK PPNGLV++ G +  +DG EK + ID EPF+PIN +LY CD+ FHT+ + +LLE +DKFGFI+MDGNG+LFGTL G+TR VL KF+VDLP+
Sbjct:   30 KGSGTSMITLIINFKDQINIHARMLAEEVGKASNIKSRVTRQNVTDALTSTLEKLKLYNKTPPNGLVIFCGLVQQEDGGEKMIKIDLEPFKPINTTLYKCDSVFHTEEVRKLLEDNDKFGFIIMDGNGSLFGTLQGSTRTVLLKFNVDLPK 180          

HSP 2 Score: 30.0314 bits (66), Expect = 5.671e-51
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSA RFA
Sbjct:  180 KKHGRGGQSANRFA 193          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_TRYBB (Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma brucei brucei GN=ERF1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.624e-50
Identity = 87/151 (57.62%), Postives = 121/151 (80.13%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            RG GTS+IS+ M P++Q+S +   L +E+GTASNIKS  N+ SV  AIT++  RLK YN++PPNGL+LY GT++T + KEKK+T+D EPF+P++ SLYLCDNKFHT+ L+ +LESD+KFGFIV+DG+GT + TL G+ +E L  F+V+LP+
Sbjct:   29 RGMGTSVISIYMTPKEQISGMVTKLNNEYGTASNIKSHTNKLSVQSAITASLGRLKQYNRLPPNGLLLYCGTVLTAENKEKKLTLDIEPFKPVSRSLYLCDNKFHTEELHRMLESDEKFGFIVVDGSGTTYATLCGSVKEKLSSFTVELPK 179          

HSP 2 Score: 28.1054 bits (61), Expect = 3.624e-50
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQS  RFA
Sbjct:  179 KKHGRGGQSKNRFA 192          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_GIALA (Eukaryotic peptide chain release factor subunit 1 OS=Giardia lamblia GN=ERF1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.723e-50
Identity = 91/150 (60.67%), Postives = 118/150 (78.67%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            G+GTS+ISL++PP +Q+S VT ML +E+GTASNIKSRVN+ +VL AITSA  RLKLYN++PPNGL +Y G I  +DGK  KV ID+ P++PI+  +YLCD+KFHT+ L ELL +DD FGFI+MDG  TL  TLSG  R +L + +VDLP+
Sbjct:   35 GSGTSVISLLIPPGEQLSSVTGMLTNEYGTASNIKSRVNKNAVLSAITSAMSRLKLYNRLPPNGLAVYCGEI-EEDGKNTKVVIDYTPYKPISNFIYLCDSKFHTEHLRELLTNDDTFGFIIMDGKETLMATLSGTVRTILDRSTVDLPK 183          

HSP 2 Score: 30.4166 bits (67), Expect = 4.723e-50
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQS++RFA
Sbjct:  183 KKHGRGGQSSVRFA 196          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_OXYTR (Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha trifallax GN=ERF1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.568e-48
Identity = 87/152 (57.24%), Postives = 113/152 (74.34%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +GNGTSM+SLI+PP+D +++  K+L  E   A NIKSR+ +QSV+ AITS +++LKLY + P NGL LY G I  +DGK EKK+  DFEPFRPIN  LY C  KF T+ L  LL  DDKFGFI++DGNG L+ TL GN+RE+L K +V+LP+
Sbjct:   32 KGNGTSMVSLIIPPKDDINKYGKLLTGEMSAAQNIKSRITKQSVVTAITSTKEKLKLYKQTPTNGLCLYCGVIYMEDGKTEKKINFDFEPFRPINQFLYFCGGKFQTEPLLSLLADDDKFGFIIVDGNGALYATLQGNSREILQKITVELPK 183          

HSP 2 Score: 26.1794 bits (56), Expect = 5.568e-48
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKH +GGQS++RFA
Sbjct:  183 KKHRKGGQSSVRFA 196          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_STYMT (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia mytilus GN=ERF1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 9.459e-48
Identity = 85/152 (55.92%), Postives = 114/152 (75.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G I+ +DGK EKK+  DFEPFRPIN  +Y C  KF T+ L  LL  DDKFGFI++DGNG L+ TL GN+RE+L K +V+LP+
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREILQKITVELPK 183          

HSP 2 Score: 26.1794 bits (56), Expect = 9.459e-48
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKH +GGQS++RFA
Sbjct:  183 KKHRKGGQSSVRFA 196          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_STYLE (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia lemnae GN=ERF1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 9.459e-48
Identity = 85/152 (55.92%), Postives = 114/152 (75.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G I+ +DGK EKK+  DFEPFRPIN  +Y C  KF T+ L  LL  DDKFGFI++DGNG L+ TL GN+RE+L K +V+LP+
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREILQKITVELPK 183          

HSP 2 Score: 26.1794 bits (56), Expect = 9.459e-48
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKH +GGQS++RFA
Sbjct:  183 KKHRKGGQSSVRFA 196          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_DILMA (Eukaryotic peptide chain release factor subunit 1 OS=Dileptus margaritifer GN=eRF1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.461e-48
Identity = 87/151 (57.62%), Postives = 113/151 (74.83%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +G+GTSMISLI+  +DQ++   KML DE G ASNIKSRV RQ+V  A+TS  ++LKLYNK P NGL++Y G     D  EK   ID EPF+PIN SLY CD+ FHT+ + +LLE +D+FGF++MDGNG+LFG++ G TR V+ KF VDLP+
Sbjct:   30 KGSGTSMISLIINYKDQINPFMKMLVDEVGKASNIKSRVTRQNVTDALTSTMEKLKLYNKTPNNGLIIYCGLASEGDSGEKMFKIDMEPFKPINTSLYRCDSVFHTEEVKKLLEDNDRFGFLIMDGNGSLFGSVQGATRTVIQKFLVDLPK 180          

HSP 2 Score: 28.8758 bits (63), Expect = 9.461e-48
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQS+ RFA
Sbjct:  180 KKHGRGGQSSNRFA 193          
The following BLAST results are available for this feature:
BLAST of FC931478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_BLEAM3.735e-5657.06Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU1.406e-5557.06Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TETTH4.803e-5360.93Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA5.671e-5159.60Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TRYBB3.624e-5057.62Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_GIALA4.723e-5060.67Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_OXYTR5.568e-4857.24Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYMT9.459e-4855.92Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYLE9.459e-4855.92Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DILMA9.461e-4857.62Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34105E09EF PostHarvP1 Citrus clementina cDNA clone C34105E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931478 ID=FC931478; Name=FC931478; organism=Citrus clementina; type=EST; length=700bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTCAGTGTTG
ACCTTCCAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCGGTTTGCCC
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