FC931478

Overview
NameFC931478
Unique NameFC931478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 6.555e-46
Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +GNGTS+ISLI+PP++Q+S + + L D  G A NIKS+  +++V  AI S +Q+L +  ++PPNGL+LY G  + +D K EK++    EP R IN + +LC+N F+T  L ++L+  DKFGFI+MDGNG+LFGTL GN RE+LHKF VDLP+
Sbjct:   25 KGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGNAREILHKFDVDLPK 176          

HSP 2 Score: 32.7278 bits (73), Expect = 6.555e-46
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFA 699
            KKHGRGGQSALRFA
Sbjct:  176 KKHGRGGQSALRFA 189          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.492e-27
Identity = 62/149 (41.61%), Postives = 85/149 (57.05%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            G GT +ISL +PP  Q+S V   L DE+ T+SNIKS+  R++VL AI S   RLK Y   PPNGLV + G I T   + +  T   EP  PI   +Y CD++FHT+ L  +L+  + +G IV+D      G L+G   EV+      +P
Sbjct:   27 GRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNGTRIEVVENVQSQVP 175          

HSP 2 Score: 21.557 bits (44), Expect = 7.492e-27
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  640 VQC*PSKKHGRGGQSALRF 696
            VQ     KH +GGQS+ RF
Sbjct:  170 VQSQVPSKHHQGGQSSRRF 188          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.046e-25
Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            G GT +ISL +PP  Q+S V   L DE+ T+SNIKS+  R++VL AI S   RLK Y   PPNG V + G I T   + +  T   EP  PI   +Y CD++FH + L  +LE  + +G IV+D      G L+G   EV+      +P
Sbjct:   27 GRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVVDNVQSQVP 175          

HSP 2 Score: 21.557 bits (44), Expect = 1.046e-25
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  640 VQC*PSKKHGRGGQSALRF 696
            VQ     KH +GGQS+ RF
Sbjct:  170 VQSQVPSKHHQGGQSSRRF 188          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 59/150 (39.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EVL + + ++P
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVLDELTSNVP 174          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 59/150 (39.33%), Postives = 88/150 (58.67%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG GT +I++ +PP +++S V   + +E+  ASNIKS+  R++V  AI    QRLK+  + P NGLV+  GT V D  KEK V    EP  P++  +Y CD+KF+ + L E LE  D +G +VMD      G + G   E + + + D+P
Sbjct:   23 RGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGETPENGLVVLVGT-VQDGTKEKMVAELIEPPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKGKRIEPVKRLTSDVP 171          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 56/150 (37.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+ + + ++P
Sbjct:   22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDELTSNVP 171          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   E+L + + ++P
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELLDELTSNVP 174          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY + P  GL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+   + ++P
Sbjct:   22 RGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVIEDLTSNVP 171          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY K P NGL L+ G +   +G          P  P+   LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+   + ++P
Sbjct:   22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDDLTSNVP 171          
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   + +G I ++ N    G L G   EVL + + ++P
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVLDELTSNVP 174          
The following BLAST results are available for this feature:
BLAST of FC931478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_LOXST6.555e-4651.97Eukaryotic peptide chain release factor subunit 1 ... [more]
RF1_THEVO7.492e-2741.61Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_THEAC1.046e-2540.94Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_PYRAB1.028e-2439.33Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_METKA1.028e-2439.33Peptide chain release factor subunit 1 OS=Methanop... [more]
RF1_PYRKO2.290e-2437.33Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRHO2.990e-2438.67Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_THESM6.662e-2436.67Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_THEON6.662e-2437.33Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_PYRFU6.662e-2438.67Peptide chain release factor subunit 1 OS=Pyrococc... [more]

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Properties
Property NameValue
Genbank descriptionC34105E09EF PostHarvP1 Citrus clementina cDNA clone C34105E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931478 ID=FC931478; Name=FC931478; organism=Citrus clementina; type=EST; length=700bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTCAGTGTTG
ACCTTCCAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCGGTTTGCCC
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