FC931478
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 6.555e-46 Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661 +GNGTS+ISLI+PP++Q+S + + L D G A NIKS+ +++V AI S +Q+L + ++PPNGL+LY G + +D K EK++ EP R IN + +LC+N F+T L ++L+ DKFGFI+MDGNG+LFGTL GN RE+LHKF VDLP+ Sbjct: 25 KGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGNAREILHKFDVDLPK 176 HSP 2 Score: 32.7278 bits (73), Expect = 6.555e-46 Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 1 Query: 658 KKHGRGGQSALRFA 699 KKHGRGGQSALRFA Sbjct: 176 KKHGRGGQSALRFA 189
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 7.492e-27 Identity = 62/149 (41.61%), Postives = 85/149 (57.05%), Query Frame = 2 Query: 212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 G GT +ISL +PP Q+S V L DE+ T+SNIKS+ R++VL AI S RLK Y PPNGLV + G I T + + T EP PI +Y CD++FHT+ L +L+ + +G IV+D G L+G EV+ +P Sbjct: 27 GRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNGTRIEVVENVQSQVP 175 HSP 2 Score: 21.557 bits (44), Expect = 7.492e-27 Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1 Query: 640 VQC*PSKKHGRGGQSALRF 696 VQ KH +GGQS+ RF Sbjct: 170 VQSQVPSKHHQGGQSSRRF 188
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.046e-25 Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 2 Query: 212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 G GT +ISL +PP Q+S V L DE+ T+SNIKS+ R++VL AI S RLK Y PPNG V + G I T + + T EP PI +Y CD++FH + L +LE + +G IV+D G L+G EV+ +P Sbjct: 27 GRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVVDNVQSQVP 175 HSP 2 Score: 21.557 bits (44), Expect = 1.046e-25 Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1 Query: 640 VQC*PSKKHGRGGQSALRF 696 VQ KH +GGQS+ RF Sbjct: 170 VQSQVPSKHHQGGQSSRRF 188
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24 Identity = 59/150 (39.33%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EVL + + ++P Sbjct: 25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVLDELTSNVP 174
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24 Identity = 59/150 (39.33%), Postives = 88/150 (58.67%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG GT +I++ +PP +++S V + +E+ ASNIKS+ R++V AI QRLK+ + P NGLV+ GT V D KEK V EP P++ +Y CD+KF+ + L E LE D +G +VMD G + G E + + + D+P Sbjct: 23 RGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGETPENGLVVLVGT-VQDGTKEKMVAELIEPPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKGKRIEPVKRLTSDVP 171
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24 Identity = 56/150 (37.33%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG T ++SL +P +++V + L +E+GTA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EV+ + + ++P Sbjct: 22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDELTSNVP 171
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24 Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G E+L + + ++P Sbjct: 25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELLDELTSNVP 174
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24 Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG T ++SL +P +++V + L +E+GTA NIKS+ R++VLGA+ A Q LKLY + P GL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EV+ + ++P Sbjct: 22 RGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVIEDLTSNVP 171
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24 Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG T ++SL +P +++V + L +E+GTA NIKS+ R++VLGA+ A Q LKLY K P NGL L+ G + +G P P+ LY CD F T+ L E+L D +G I ++ N G L G EV+ + ++P Sbjct: 22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDDLTSNVP 171
BLAST of FC931478 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24 Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L + +G I ++ N G L G EVL + + ++P Sbjct: 25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVLDELTSNVP 174 The following BLAST results are available for this feature:
BLAST of FC931478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931478 ID=FC931478; Name=FC931478; organism=Citrus clementina; type=EST; length=700bpback to top |